Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A05
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 27 0.34
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 1.4
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 2.4
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 24 4.1
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 24 4.1
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 24 4.1
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 24 4.1
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 23 5.5
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 23 5.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 5.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 23 5.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 23 7.2
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 23 9.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 23 9.6
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 23 9.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 23 9.6
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 23 9.6
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 0.34
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 209 SWSNWIRSGYWNGIRFPHH 265
+W ++IR W+G++ P H
Sbjct: 217 AWDSFIRRAKWSGVKIPQH 235
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 1.4
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -2
Query: 89 CRHCCEWSHKSCVAEDSS-PGCRGDQSCP 6
C +C EW H CV S + +CP
Sbjct: 1472 CHNCLEWFHYECVGLSSDIVSTLSNYACP 1500
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 14 IDRPCSQDCYLQQHSSCATTRSS 82
+ +PCSQ +L++ SC T S+
Sbjct: 383 LPQPCSQKRHLEEDYSCLTEHSA 405
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 23.8 bits (49), Expect = 4.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 18 IAPAARTAIFSNTALVRP 71
I PA++T+ F NT ++ P
Sbjct: 16 ITPASKTSDFENTGMISP 33
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 4.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Frame = +2
Query: 179 CQIHWCWRSDSW 214
C + W W +D+W
Sbjct: 353 CGVQWWWNNDTW 364
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 4.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 49 ATQLLCDHSQQCLHTHRLFQLHLLN 123
A+ +L S+Q HTHR F+ +++
Sbjct: 118 ASSILSSLSRQFFHTHRAFKADVMD 142
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 23.8 bits (49), Expect = 4.1
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Frame = +2
Query: 182 QIHW-CWRSDSWSNW 223
Q W CW+ D WS W
Sbjct: 55 QDKWDCWKRDLWSIW 69
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 158 HQRH*LCCQIHWCWRSDSWSNWIRSGY 238
HQ H LC H C R ++W + R Y
Sbjct: 87 HQLHLLCLTYHLCTR-NTWCDDNRLNY 112
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 22 PLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLN 123
PL L++ +T ++ D + C H F+ +L+N
Sbjct: 418 PLVESLIAHSTNIMVDLVRICSHNPCRFRRNLIN 451
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 5.5
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 104 NNLC-VCRHCCEWSHKSCVAEDSSPGCRGDQSC 9
+ LC VC C H+ C E S G QSC
Sbjct: 1273 HGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSC 1305
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 5.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 24 PAARTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKD 167
P R AIF + VR A + Q V Q V T TS+ ++
Sbjct: 457 PNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEE 504
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 22 PLQPGLLSSATQLLCDHSQQCLHTHRL 102
P+ P L S +L+ + + LHTH++
Sbjct: 398 PMNPILNGSVVRLIHPFTNRNLHTHKI 424
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 22.6 bits (46), Expect = 9.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = +2
Query: 182 QIHWCWRSDSWSNWIR 229
++ W + DSW W R
Sbjct: 326 RLPWYLKDDSWKRWCR 341
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +2
Query: 32 QDCYLQQHSSCATTRSSAYTHT 97
+D Y QH C S Y+ T
Sbjct: 147 EDAYTGQHGECVLVIDSGYSFT 168
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 22.6 bits (46), Expect = 9.6
Identities = 5/14 (35%), Positives = 9/14 (64%)
Frame = +2
Query: 179 CQIHWCWRSDSWSN 220
C I+W W + +W +
Sbjct: 349 CGIYWFWNNGTWDD 362
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 22.6 bits (46), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 21 APAARTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSA 131
AP RT S T PL++ P HT + P+ Q ++
Sbjct: 351 APLQRTPSGSLT----PLSSRPAHTSLPPIPTVQTTS 383
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -1
Query: 150 WSGRCAQLIIEQVQLEQSVC 91
W G CA + Q+ S+C
Sbjct: 153 WGGLCAMKPVSQIPESDSIC 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,145
Number of Sequences: 5004
Number of extensions: 15797
Number of successful extensions: 46
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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