Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A05
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 29 0.67
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 1.2
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 27 1.6
01_06_1686 + 39188948-39190231 27 2.1
05_07_0150 - 28035518-28036390 26 3.6
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 26 3.6
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 26 3.6
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 26 4.8
02_04_0413 + 22681957-22682035,22682253-22682788 25 6.3
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 25 8.3
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 25 8.3
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 32 QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 154
++C+ ++ S A + S + HTD A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 113 CNWNNLCVCRHCCEWS-HKSCVAEDSSPGCRGDQSCP 6
C + VC C W+ H C+ ++ + +GD CP
Sbjct: 550 CGMDGTLVCCDGCPWAYHSRCIGQNKAFLPQGDWFCP 586
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 98 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCP 6
L +C C H +CV +S+P +GD CP
Sbjct: 423 LLMCDRCPSMFHHACVGLESTP--QGDWFCP 451
>01_06_1686 + 39188948-39190231
Length = 427
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 24 PAARTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 182
PAA A + RP + V APA+ +A R T+S T +A+
Sbjct: 3 PAAAAAAATRHRHARPAGHLRCAADAVSTAPAERTAARVIATSSRTASASAAS 55
>05_07_0150 - 28035518-28036390
Length = 290
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 18 IAPAARTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSA 131
+AP+A AI++ + P AA P + P A LSA
Sbjct: 113 LAPSAAAAIYARFLALIPAAADPDAAVVNPAAVLALSA 150
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 110 NWNNLCV-CRHCCEWSHKSCV 51
N +NL + C C +W H SCV
Sbjct: 191 NPDNLMIQCEDCSDWFHPSCV 211
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -2
Query: 104 NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 9
++LC C C E H C E ++ Q+C
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQAC 1034
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -2
Query: 200 ASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVCRHCCEWSHK 60
+ TN + R+ +RG E L C N+ C HC HK
Sbjct: 350 SKTNLWHMRLGHMSERGIAELMKRNLLDGCTQGNMKFCEHCVFGKHK 396
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 95 CVCRHCCEWSHKSCVAEDSSPGCRGDQSCP 6
CV CCE + C S GC G Q CP
Sbjct: 102 CVHPPCCESAAGCCCNGCSGGGCGGGQ-CP 130
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Frame = -2
Query: 251 EYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRC----NWNNLCV-C 87
E + N S SY+ + +F R G +C N ++L + C
Sbjct: 105 EGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQC 164
Query: 86 RHCCEWSHKSCV 51
C +W H SC+
Sbjct: 165 EECSDWFHPSCI 176
>04_04_0200 - 23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 21 APAARTAIFSNTALVRPLAAVPTHTQIVP 107
AP+ T NT RP +P+ Q++P
Sbjct: 1182 APSPATISVPNTVASRPFYCLPSQNQLLP 1210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,123,476
Number of Sequences: 37544
Number of extensions: 125297
Number of successful extensions: 443
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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