Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A05
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 31 0.11
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 31 0.11
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 31 0.11
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 0.20
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 0.20
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 30 0.20
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 1.0
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 1.8
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 26 4.2
U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer ... 26 4.2
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 26 4.2
AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform... 26 4.2
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 26 4.2
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 26 4.2
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 25 5.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 5.6
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 25 5.6
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 25 7.4
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 25 7.4
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 25 7.4
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 25 7.4
AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical... 25 7.4
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 25 7.4
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 25 7.4
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 25 9.7
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 25 9.7
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 129 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLII 266
A R TT KDIDSAAK+ FG+L+I
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVI 51
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 129 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLII 266
A R TT KDIDSAAK+ FG+L+I
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVI 51
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 129 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLII 266
A R TT KDIDSAAK+ FG+L+I
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVI 75
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCP 6
++G +E H CN + L +C C H +C+ E+ GD SCP
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCP 307
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCP 6
++G +E H CN + L +C C H +C+ E+ GD SCP
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCP 307
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCP 6
++G +E H CN + L +C C H +C+ E+ GD SCP
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCP 307
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 1.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 95 CVCRHCCEWSHKSCV 51
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 34 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 126
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 116 RCNWNNLCVCRHCCEWSHKSC 54
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 200 RSDSWSNWIRSGYWNGIRF 256
+ D WS+W ++ Y+N RF
Sbjct: 551 QGDHWSSWTKATYYNFSRF 569
>U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer
formation protein9, isoform b protein.
Length = 557
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 191 WCWRSDSWSNWIRSGYWNGIRFPHH 265
WC + S S+WI+ W HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 260 EGTEYRSNTRSGSSYSNCRCA-STNEFGS 177
+ + +SNT +GSS S C A STN GS
Sbjct: 324 DAVDSKSNTSNGSSDSGCGTATSTNGCGS 352
>AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform A
protein.
Length = 557
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 191 WCWRSDSWSNWIRSGYWNGIRFPHH 265
WC + S S+WI+ W HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = -2
Query: 266 NDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVC 87
N S++ SGS+ +N N + + G GG G+ + + C
Sbjct: 133 NTNNLSSSSHSMSGSNNNNSNNNVVNNYLTVYGNNGSSGGGSGSGGGSGPGADSPRIHCC 192
Query: 86 RHCCEWSH 63
R CC +SH
Sbjct: 193 RPCCPYSH 200
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 260 EGTEYRSNTRSGSSYSNCRCA-STNEFGS 177
+ + +SNT +GSS S C A STN GS
Sbjct: 310 DAVDSKSNTSNGSSDSGCGTATSTNGCGS 338
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 89 CRHCCEWSHKSCVAEDSSPGCRGDQSCPR 3
C H C+W+H +++P C PR
Sbjct: 336 CEHSCDWTH----FPETTPNCPNSCGTPR 360
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 33 RTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVT 161
+ + + L++P+ A T T P + T QTT+ T
Sbjct: 1030 KLTVLESKKLIKPIKAHTTPTAASNTTPIPVKTTTTLQTTTAT 1072
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 25.4 bits (53), Expect = 5.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 104 NNLCVCRHCCEWSHKSC 54
N C+C C +W H C
Sbjct: 251 NGTCLCTKCQKWVHLKC 267
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Frame = +2
Query: 185 IHWC-WRSDSWSNWIRSGY 238
I W W S SWS W R +
Sbjct: 213 ISWSSWSSSSWSTWARHAF 231
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Frame = +2
Query: 185 IHWC-WRSDSWSNWIRSGY 238
I W W S SWS W R +
Sbjct: 213 ISWSSWSSSSWSTWARHAF 231
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 89 CRHCCEWSHKSCVAEDSSPGCR 24
C++C +HK VA+ S P CR
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR 1113
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 89 CRHCCEWSHKSCVAEDSSPGCR 24
C++C +HK VA+ S P CR
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR 1113
>AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical
protein F23C8.11 protein.
Length = 432
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 173 LCCQIHWCWRSDSWSN 220
L +I CW+SD WS+
Sbjct: 165 LLYEIEACWKSDEWSS 180
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 92 VCRHCCEWSHKSCVAEDSSPGCRGDQSC 9
+CR C + + ++ S+ CR D+SC
Sbjct: 24 ICRACSAFFRRYVLSPKSAIKCRKDKSC 51
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 119 SRCNWNNLCVCRHCCEWS-HKSCVAED 42
+ CNWNN C C ++ + C A++
Sbjct: 457 AECNWNNRYKCTICADYDLCRQCEAKN 483
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 83 HCCEWSHKSCVAEDSSPGCRGDQSCPR 3
HCCE K V D +P C Q+ R
Sbjct: 126 HCCEKEFKDKVDNDYNPPCPIGQTIVR 152
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 15 LIAP-AARTAIFSNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVT 161
L+ P +ARTA S ++ +PT Q + + L T TT+VT
Sbjct: 348 LLQPESARTASSSASSKPEVQTTIPTEIQTPSLRTSSLKTSTTVTTTTVT 397
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 104 NNLCVC-RHCCEWSHKSCVAEDSSPGCRGDQSC 9
N C C R CC + + +C + C +Q C
Sbjct: 175 NGDCGCGRPCCYYQNPTCCNQGQKACCPPEQPC 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,779,268
Number of Sequences: 27780
Number of extensions: 101433
Number of successful extensions: 361
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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