Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A05
(267 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 0.24
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 0.24
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 29 0.32
At1g69280.1 68414.m07943 expressed protein 29 0.56
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac... 28 0.74
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 28 0.74
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa... 28 0.97
At1g48490.1 68414.m05420 protein kinase, putative similar to inc... 28 0.97
At4g22860.1 68417.m03302 expressed protein 27 2.2
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide... 26 3.0
At4g28700.1 68417.m04101 ammonium transporter, putative similar ... 26 3.9
At2g22730.1 68415.m02694 transporter-related low similarity to s... 26 3.9
At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1.... 26 3.9
At5g55690.1 68418.m06943 MADS-box protein (AGL47) 25 6.9
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)... 25 6.9
At4g17250.1 68417.m02594 expressed protein 25 6.9
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ... 25 6.9
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 25 6.9
At5g05280.1 68418.m00567 zinc finger (C3HC4-type RING finger) fa... 25 9.1
At4g12910.1 68417.m02019 serine carboxypeptidase S10 family prot... 25 9.1
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -2
Query: 257 GTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNN 99
GT Y N G S +TN FG V G GG + ++R W N
Sbjct: 269 GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGN 321
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -2
Query: 257 GTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNN 99
GT Y N G S +TN FG V G GG + ++R W N
Sbjct: 269 GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGN 321
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 113 CNWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 9
CN C H + + +C SS GCR +SC
Sbjct: 741 CNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESC 775
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 113 CNWNNLCVCRHCCEWSHKSCVAEDSS 36
C++N+ C CC WS SC SS
Sbjct: 344 CDYNSSCGWLFCCHWSCWSCCCCSSS 369
>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 228
Score = 28.3 bits (60), Expect = 0.74
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = -2
Query: 251 EYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRC----NWNNLCV-C 87
E + S SSY+ ++F R G + +C N ++L V C
Sbjct: 98 EGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQC 157
Query: 86 RHCCEWSHKSCV 51
C EW H SC+
Sbjct: 158 EECSEWFHPSCI 169
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 28.3 bits (60), Expect = 0.74
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = -2
Query: 242 SNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVCRHC-CE-- 72
S TR G ++S+C + T+ + GD GL+ + C + C C C C+
Sbjct: 478 SETRKGLTFSSCSDSETSGCRCPLGFLGD--GLKCED---IDECKEKSACKCDGCKCKNN 532
Query: 71 WSHKSCVAEDSSPGCRGDQSC 9
W C ++S + + +C
Sbjct: 533 WGGYECKCSNNSIYMKEEDTC 553
>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
family protein contains Pfam PF03126: Plus-3 domain;
contains Pfam PF02201: BAF60b domain of the SWIB
complex; contains Pfam PF00628: PHD-finger domain;
contains Prosite Zinc finger, C3HC4 type (RING finger),
signature; similar to CPRF interacting protein
(GI:9588690) [Petroselinum crispum]
Length = 571
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 98 LCVCRHCCEWSHKSCVAEDSSPGCRGD 18
LC + C + H+SCV +DSS GD
Sbjct: 36 LCDFKDCPKVYHESCVEKDSSASKNGD 62
>At1g48490.1 68414.m05420 protein kinase, putative similar to
incomplete root hair elongation (IRE) [Arabidopsis
thaliana] gi|6729346|dbj|BAA89783
Length = 878
Score = 27.9 bits (59), Expect = 0.97
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 71 WSHKSCVAEDSSPGCR 24
W H+SC++E+SS CR
Sbjct: 181 WGHQSCISEESSIICR 196
>At4g22860.1 68417.m03302 expressed protein
Length = 509
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 50 QHSSCATTRSSAYTHTD 100
QHSS TTRS AY +D
Sbjct: 330 QHSSAVTTRSHAYKESD 346
>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
identical to pseudo-response regulator 5 GI:10281006
from [Arabidopsis thaliana]
Length = 667
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 5 EGKIDRPCSQDCYLQQHSSCATTRSSAYTHTD 100
EG DR CS D +++ S AT S+ H D
Sbjct: 563 EGLQDRDCSMDVDERRYVSSATEHSAIGNHID 594
>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
{Lycopersicon esculentum}; contains Pfam profile
PF00909: Ammonium Transporter Family
Length = 504
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 188 HWCWRSDSWSNWIRS 232
HW W SD W++ RS
Sbjct: 181 HWFWSSDGWASPARS 195
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 148 VWKVRTADN*AGATGTICVCVGTAASG----RTRAVLLKIAVLAAGAINLALV 2
++K++ AD GA IC VGT + G R A + L +GA L V
Sbjct: 327 IYKMKNADMIFGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAV 379
>At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1.2)
nearly identical to SP|Q9ZPJ8 Ammonium transporter 1,
member 2 (AtAMT1;2) {Arabidopsis thaliana}
Length = 514
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 188 HWCWRSDSWSNWIRS 232
HW W SD W++ RS
Sbjct: 185 HWFWSSDGWASASRS 199
>At5g55690.1 68418.m06943 MADS-box protein (AGL47)
Length = 277
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 61 LCDHSQQCLHTHRLFQLHLLNY 126
LC +++QC ++LF L ++Y
Sbjct: 161 LCGYNRQCFEQYQLFPLPTMDY 182
>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
identical to PIR|T05180|T05180 S-receptor kinase ARK3
precursor - [Arabidopsis thaliana]
Length = 850
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 215 SNWIRSGYWNGIRF 256
S RSG WNGIRF
Sbjct: 214 SRMYRSGPWNGIRF 227
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 155 CHQRH*LCCQIHWCWRSDSWSNWIRSGY 238
C R LCC H+ ++SDS +N SG+
Sbjct: 379 CSSRILLCC-FHFTFKSDSVANAESSGF 405
>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
protein / PEP carboxylase family protein similar to
SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 1032
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 200 ASTNEFGSRVNVFGDRGGLEG 138
A+ NEFG ++ +F RGG G
Sbjct: 719 AACNEFGIKITLFHGRGGSIG 739
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -3
Query: 187 NLAAESMSLVTEVVWKVRTADN*AGATGTICVCVGTAASGRTRAVLLKIAVLAAGAIN 14
N+A+E + L+ E+ + + +C+ VG ++SG+T +V+ +A L +N
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAH-CVQNKWLCILVGPSSSGKT-SVIRILAQLTGYPLN 2083
>At5g05280.1 68418.m00567 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 176
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 35 DCYLQQHSSCATTRSSAYTH 94
D +L HSSC T R S H
Sbjct: 142 DTWLLSHSSCPTCRQSLLEH 161
>At4g12910.1 68417.m02019 serine carboxypeptidase S10 family protein
SERINE CARBOXYPEPTIDASE I PRECURSOR - Hordeum vulgare,
SWall:CBP1_HORVU
Length = 484
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 19 SPLQPGLLSSATQLLCDHSQQCL 87
+P+ PG++ S +QLL D + C+
Sbjct: 332 APVHPGIVPSWSQLLADVTVPCI 354
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,468,248
Number of Sequences: 28952
Number of extensions: 92387
Number of successful extensions: 350
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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