Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A04
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         176   1e-44
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             170   8e-43
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   30   1.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   2.1  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   2.8  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   2.8  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   29   3.8  
SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   6.6  
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)                   28   6.6  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   6.6  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   8.7  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   8.7  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  176 bits (429), Expect = 1e-44
 Identities = 76/112 (67%), Positives = 89/112 (79%)
 Frame = +3

Query: 249 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 428
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG               +YTG  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 429 EVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 584
           EV GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  170 bits (413), Expect = 8e-43
 Identities = 93/193 (48%), Positives = 117/193 (60%), Gaps = 37/193 (19%)
 Frame = +3

Query: 123 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 212
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 213 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 371
             R   NK          ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 372 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 551
                        +YTG  +V GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 552 GAVDGGLNVPHSI 590
           GAVDGGL +PHS+
Sbjct: 197 GAVDGGLEIPHSM 209


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -2

Query: 506 AYIQVTSECSWAIVNWFNIIFITSDF---SGTCV-ETVQAEPLQQSSCQQQTSAVGSSIV 339
           A +Q TS   WA+  WF    +T  F   SGT V   V+ E +Q S        VG  + 
Sbjct: 132 AQVQDTSRFVWALPGWFGNSEVTRHFRGDSGTSVLIRVKGERVQVSRSSSHGGRVG-GVS 190

Query: 338 SQTHLD 321
             TH D
Sbjct: 191 RSTHRD 196


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 577 TFKPPSTAPFM-APNTRAPVVVRAKPTSK*HLNAPGPL--STGSTLYSSPVTSVAPV*RL 407
           T  PP+  P + AP++  P    A P     L+AP PL  ++GS+  SS      P  R 
Sbjct: 557 TAPPPAPPPSVFAPSSAVPTPATAPPPVAATLSAPPPLDSTSGSSTISSATICFGPTNRC 616

Query: 406 SKPS 395
           +  S
Sbjct: 617 TTTS 620


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 571 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 452
           +P    PF+ P++RAP    A PT+      P P S  TG T
Sbjct: 357 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 571 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLS--TGST 452
           +P    PF+ P++RAP    A PT+      P P S  TG T
Sbjct: 223 RPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 571 KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVT 431
           +P S  P   P T A  V R  PT+     +P P      L  +PVT
Sbjct: 85  QPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFFQQQPLVPTPVT 131


>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 178 IKTNTTLQSTD*LYGYPIKMLPV-KLHTHALRVITLSVLPTLMNSHAMVSRWV*LTMLLP 354
           IK NT  ++T  L  + ++  PV K H    R + L    TL+N+   V+ W+   +LL 
Sbjct: 333 IKGNTISENT--LSTFRVRNTPVSKQHDDINRALFLE--STLLNTFQNVALWLQKFLLLK 388

Query: 355 TALVC 369
            A+VC
Sbjct: 389 PAMVC 393


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 210 LIVRLSNKDVTCQVAYSRIEGD-HIVC 287
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 386 QSSCQQQTSAVGSSIVSQTHLD--TIAWEFMRVGSTDNVITLNA*VCNLTGNIFI 228
           Q  C   T+  GS IV+   +D   +  E  R+G + NV  L   V  LTG + I
Sbjct: 378 QCLCDHLTAFGGSMIVAPNPIDFNKVFLEMSRLGESGNVAVLATIVSILTGYLVI 432


>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
          Length = 1071

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 434 DFSGTCVETVQAEP-LQQSSCQQQTSAVGSSIVSQTHLDTIAWE 306
           D++G C +T    P L  S C Q+   +GSS    ++   ++ E
Sbjct: 665 DYAGCCPDTYINTPCLHNSGCDQELGVLGSSCSDNSYTQLLSKE 708


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 78  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 173
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 258 SRIEGDHIVCAAYSH-ELPRYGIKVGLTNYAAAY 356
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -3

Query: 571  KPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 392
            KPP+  P ++P+ +   +    P    +L  P   ++ STL  S   S+  V   SKP  
Sbjct: 981  KPPTPPPVVSPHKQTRPI---SPVGASNLYKPLTPTSPSTLQPSKQDSLVYVSSKSKPVT 1037

Query: 391  CNNLLASNRPV 359
              ++L  ++PV
Sbjct: 1038 PESVLNQSKPV 1048


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 63   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 149
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,714
Number of Sequences: 59808
Number of extensions: 420817
Number of successful extensions: 1145
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)