Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A04
(591 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 26 0.24
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 26 0.24
AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase pro... 24 0.97
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 2.2
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 3.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.8
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 6.8
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 9.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 9.0
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 9.0
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 9.0
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 9.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 9.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 9.0
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 26.2 bits (55), Expect = 0.24
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 81 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 206
KN++ +++Y+ K R +T+ K + N YN Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 26.2 bits (55), Expect = 0.24
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 81 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 206
KN++ +++Y+ K R +T+ K + N YN Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325
>AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase
protein.
Length = 85
Score = 24.2 bits (50), Expect = 0.97
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 264 CVSMQLDR*HLYWITVQSVGTLECCICFYPGQRGVCEHSSQFFP 133
C S+ L +L+W+ V GT ++P G EH S+FFP
Sbjct: 29 CTSLNLS--NLFWLFV---GT------YFPSLIGANEHYSKFFP 61
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 257
TD RK ++ +++ K ++ ++V + N+D +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 3.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -3
Query: 223 NRTISRYFGVLYLFLSWTTRRLRA**SVFPSRRLLNLTW 107
N Y ++L SW RLR ++ R+L++ W
Sbjct: 45 NEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVDW 83
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 573 LNLHQRRPSWHQI 535
LN+H R+PS H++
Sbjct: 320 LNVHYRKPSTHKM 332
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -1
Query: 189 ICFYPGQRGVCEHSSQFFPH 130
+C +PG +CE F H
Sbjct: 282 VCKWPGCEVICEDYQAFLKH 301
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 589 IECGTFKPPSTAPFMAPNTRAP 524
I CG F P S P+++ + P
Sbjct: 369 IYCGNFPPRSMEPWISMQEQIP 390
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 258
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 217 SSHYSRERSCSRDRNREYRKKDRRYEKLHNE 247
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.0 bits (42), Expect = 9.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 141 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNK 233
+ +Y+R+R +D+N+ K R +L N+
Sbjct: 228 SSHYSRERSCSRDRNREYKEKDRRYEKLHNE 258
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.0 bits (42), Expect = 9.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 72 KVVKNKQYFKRYQVKFKRRREGKTD 146
K KN+ +++Y+ K R KT+
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTE 310
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,503
Number of Sequences: 438
Number of extensions: 3581
Number of successful extensions: 24
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -