Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A04
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   226   1e-59
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   225   2e-59
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                29   2.3  
At2g29800.1 68415.m03620 kelch repeat-containing F-box family pr...    29   2.3  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   4.1  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   4.1  
At3g54500.2 68416.m06031 expressed protein                             28   4.1  
At3g54500.1 68416.m06030 expressed protein                             28   4.1  
At2g24180.1 68415.m02889 cytochrome P450 family protein                28   4.1  
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    28   5.4  
At1g63420.1 68414.m07172 expressed protein                             27   7.1  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    27   9.4  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    27   9.4  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  226 bits (552), Expect = 1e-59
 Identities = 105/176 (59%), Positives = 128/176 (72%)
 Frame = +3

Query: 60  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 420 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 587
           G  E TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHS 175


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  225 bits (550), Expect = 2e-59
 Identities = 105/176 (59%), Positives = 128/176 (72%)
 Frame = +3

Query: 60  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
             Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAYCTG             D  Y 
Sbjct: 61  VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query: 420 GATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHS 587
           G  E TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS
Sbjct: 121 GNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHS 175


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = -3

Query: 568 PPSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAP 419
           PP+  P  AP T  P  V   PTS    +AP P S   T  +SP     P
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT--ASPPAPEGP 86


>At2g29800.1 68415.m03620 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 414

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 488 MLLGCRLSTYHYWRSRIWCHE 550
           ++LGC  S++ Y+R  +WC E
Sbjct: 356 VILGCYRSSFDYYRKDVWCVE 376


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 78  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 251
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 78  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 251
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At3g54500.2 68416.m06031 expressed protein 
          Length = 648

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 551 LHGTKYASASSGTC*AYIQVTSEC--SWAIVNWFNIIFITSDFSGTCVETVQAEPLQQSS 378
           LH     S+SS      +     C  SW   +  N   +  D S T +    AEP++  S
Sbjct: 57  LHDKNLGSSSSHNVDEGLPQPDFCMSSWPDTSLTNATKVDQDLSATELSKCLAEPVRYDS 116

Query: 377 CQQQTSAVG 351
            +++TS +G
Sbjct: 117 TREKTSELG 125


>At3g54500.1 68416.m06030 expressed protein 
          Length = 648

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 551 LHGTKYASASSGTC*AYIQVTSEC--SWAIVNWFNIIFITSDFSGTCVETVQAEPLQQSS 378
           LH     S+SS      +     C  SW   +  N   +  D S T +    AEP++  S
Sbjct: 57  LHDKNLGSSSSHNVDEGLPQPDFCMSSWPDTSLTNATKVDQDLSATELSKCLAEPVRYDS 116

Query: 377 CQQQTSAVG 351
            +++TS +G
Sbjct: 117 TREKTSELG 125


>At2g24180.1 68415.m02889 cytochrome P450 family protein
          Length = 503

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 374 QQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 264
           Q Q + +GSS ++ TH+  I  +    G   +VITL+
Sbjct: 281 QSQETKLGSSRITDTHIRAIIMDLFVAGVDTSVITLD 317


>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 559 TAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYS---SPVTSVAPV*RLSKPS 395
           T P+MAP     ++    PT+     AP P+ T + +      PVT+ AP      PS
Sbjct: 671 TIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKAPTSSPGTPS 728


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = +2

Query: 491 LLGCRLSTYHYWRSRI----WCHEGRR 559
           LL C LS+ H W +RI    W  EG+R
Sbjct: 346 LLTCNLSSLHDWNARIFIQDWISEGQR 372


>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 464 NWFNIIFITSDFSGTCVETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAW 309
           NW  ++F    FSG  V T++  P +      Q  A  +  V++ H++  +W
Sbjct: 13  NWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNE-HMEETSW 63


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 464 NWFNIIFITSDFSGTCVETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAW 309
           NW  ++F    FSG  V T++  P +      Q  A  +  V++ H++  +W
Sbjct: 13  NWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNE-HMEETSW 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,469
Number of Sequences: 28952
Number of extensions: 273014
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)