Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A02
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 128 2e-30
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 128 2e-30
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 126 5e-30
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 1.8
01_05_0589 + 23459847-23460344,23460493-23461296 27 4.2
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 5.6
02_02_0233 + 8105765-8107840 27 5.6
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 27 7.3
04_04_1557 + 34411215-34411571,34411676-34411831 27 7.3
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 27 7.3
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 27 7.3
09_01_0067 + 1001137-1002708,1003476-1003529 26 9.7
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 128 bits (308), Expect = 2e-30
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 128 bits (308), Expect = 2e-30
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 126 bits (305), Expect = 5e-30
Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 56 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 211
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 216 RRERSAGLAGWIPRSLLLH*PHLGIFL 136
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 219 QRRERSAGLAGWIPRSLLLH*PHLGIFL 136
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
>02_02_0233 + 8105765-8107840
Length = 691
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 384 IYLAAFLPDFMLACCALRTFTIFCSSIKKAL 292
+YL F PD ++ FT+ C I++AL
Sbjct: 529 MYLLLFQPDMLMPGTQQSLFTVACREIRRAL 559
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 22 NGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIPV 123
+GAA +IQT L K + + +T W +GI +
Sbjct: 1120 SGAAEHIQTGTNLLQKARFLQKNTRKWTCIGIVI 1153
>04_04_1557 + 34411215-34411571,34411676-34411831
Length = 170
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 134 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 226
P +I RC + ++ ++P RP++ SRLC R
Sbjct: 138 PNRISRCLEEGAEDFLLKPVRPSDVSRLCSR 168
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 223 PQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQ 378
P ED R W +++ + A L+R E+ +S +A + ++ R+
Sbjct: 80 PSEDEAQREWEAEMARRLKEAEEMEELERTAEELQSQAAAEAPDESEEEKRE 131
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 134 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 226
P +I RC + ++ I+P RP++ SRLC R
Sbjct: 97 PTRIRRCLEEGAEDFLIKPVRPSDVSRLCNR 127
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 170 KLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
+LRG+ + P S LC +K +Y G +C I + ++ KI++
Sbjct: 201 RLRGLAQSEPVAVSSLCLHSLCLKELYNG----QCFSSLITNSPNLKTLKIIR 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,508
Number of Sequences: 37544
Number of extensions: 199643
Number of successful extensions: 546
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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