Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A02
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          57   6e-09
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                29   1.1  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   1.9  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = +2

Query: 194 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVLR 337
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQKI V+VL+
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIVVRVLK 50


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 QMREAAHRQSFLDRRTEDRESPKSATGQHK 357
           QMRE     S L++R ED    KS  G H+
Sbjct: 142 QMREMREEMSALEKREEDMRKRKSEVGNHQ 171


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 47  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 136
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 208  FSSLLPQEDSEARLWRC--SLSQMREAAHRQSFLDRRTEDRESPK 336
            F  +L   D     WR   ++  +R+   RQ  L R  +DR SPK
Sbjct: 971  FPPMLDSADMHFETWRQRRAVEHLRQQHERQDILGRPHQDRSSPK 1015


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 173 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 331
           ++G++  R  + S  C R   V +VY   +C +C +   V+   + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,184,778
Number of Sequences: 59808
Number of extensions: 225712
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)