Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A02
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 122 1e-28
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 30 0.54
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 30 0.54
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 28 2.2
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 2.2
AC006627-2|AAT68899.1| 169|Caenorhabditis elegans Abnormal cell... 28 2.2
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical p... 27 6.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 6.7
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 27 6.7
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 26 8.8
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 26 8.8
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 122 bits (294), Expect = 1e-28
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
M R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 203 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLR 337
L ++TV R YGG L VK+RI RAFL+EEQKIV KV++
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIVNKVIK 106
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 268 VTENTSINALHCLLAVAETRTLCG 197
V +NTSI+ HCL +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 30.3 bits (65), Expect = 0.54
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 268 VTENTSINALHCLLAVAETRTLCG 197
V +NTSI+ HCL +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 65 TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 244
+K R++V L YQ++ K + PR + +L G+ A S C R T++R
Sbjct: 2336 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 65 TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 244
+K R++V L YQ++ K + PR + +L G+ A S C R T++R
Sbjct: 2339 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2398
>AC006627-2|AAT68899.1| 169|Caenorhabditis elegans Abnormal cell
lineage protein 44,isoform b protein.
Length = 169
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 360 DFMLACCALRTFTIFCS-SIKKALTMRCFTH 271
DF AL TF I CS +IKK L C H
Sbjct: 7 DFFFQSTALSTFFILCSLAIKKTLISSCKCH 37
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 2 HEAKSYKMVQRLTF--RRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSK 172
H AKS +V ++ RRR S ++S++R +VR+ G + + + R G+ +S
Sbjct: 64 HTAKSPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSS 123
Query: 173 LRGIQPARPAERSR 214
R +R RSR
Sbjct: 124 KRSRSRSRSRSRSR 137
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 351 LACCALRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 205
L+CCA ++ + C ++++ CF + RT P F +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189
>Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical
protein C39E9.12 protein.
Length = 409
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 307 DQESSDDALLHAFVTENTSINALHCLLAVAETRTLCGPRGLD 182
++E + FV ENT NA+ +L LCG G+D
Sbjct: 82 EEEEETENTTGRFVHENTPTNAVAVVLDDDLRNRLCGSLGID 123
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 172 TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQ 351
TT +R R + P E+S + S+ E+ R++F+DRR E+ + A+ +
Sbjct: 4237 TTARQSRVYRSSSQVRAPSEESIQKTEALRRSESLESNARKTFVDRRRENVSLSRKASVE 4296
Query: 352 HKVWQKGR 375
+ + R
Sbjct: 4297 RETNMEAR 4304
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 23 MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 196
+V +LT +++ + TK+ + V P + +KKP K+PR + +G + A
Sbjct: 67 VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126
Query: 197 PAERSR 214
PA + +
Sbjct: 127 PAAKKK 132
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 26.2 bits (55), Expect = 8.8
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 119 QYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 292
+YVK+ KIP+ K + ++P P + Y +T+ G VLC + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588
Query: 293 RAFLIEEQKIVKVL 334
R E + +L
Sbjct: 589 RLKQEELDAVTSIL 602
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 167 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 262
+KL +P RP ++ R KT+K YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,594
Number of Sequences: 27780
Number of extensions: 163207
Number of successful extensions: 518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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