Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A02
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 119 6e-28
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 117 3e-27
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 116 4e-27
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 2.7
At1g63240.1 68414.m07148 expressed protein 28 2.7
At1g48740.1 68414.m05454 expressed protein 28 2.7
At2g17830.1 68415.m02065 F-box family protein contains Pfam doma... 27 3.5
At3g52920.2 68416.m05833 expressed protein weak similarity to en... 27 4.7
At3g52920.1 68416.m05832 expressed protein weak similarity to en... 27 4.7
At3g20710.1 68416.m02621 F-box protein-related contains weak hit... 27 4.7
At1g33410.1 68414.m04136 expressed protein 27 4.7
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 27 6.2
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 26 8.2
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera... 26 8.2
At1g32585.1 68414.m04021 VQ motif-containing protein-related con... 26 8.2
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 119 bits (287), Expect = 6e-28
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 117 bits (282), Expect = 3e-27
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ KK P+C +++GI RP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 116 bits (280), Expect = 4e-27
Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 202
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ K P+C +++GI RPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 203 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 328
E RSRL ++TV R YGGVL V++RIVRAFL+EEQKIVK
Sbjct: 61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 213 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 121
+ERS + GW P+ L+L P +G GFLT+
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVG---GFLTH 374
>At1g63240.1 68414.m07148 expressed protein
Length = 548
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 5 EAKSYKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGI 184
EA S+ ++ + R S SN + TP + + K+ K RC K +GI
Sbjct: 354 EAPSHSVLVFESSNARPSVEDLSNTIELGLTPQEKNISSSKKRKKNTERCASKNIKKKGI 413
Query: 185 Q-PARPAERSR 214
+ P+R +R +
Sbjct: 414 EAPSRKLQRGK 424
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 121
+FR+ +S NTK + RRI+ P G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158
>At2g17830.1 68415.m02065 F-box family protein contains Pfam domain,
PF00646: F-box domain
Length = 394
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 165 LH*PHLGIFLGFLTYWYTKRPPGVRTILLWFDF 67
+H H G+ + TYWY G L+ FDF
Sbjct: 208 IHSYHRGLSVKGNTYWYATEKHGYVNFLICFDF 240
>At3g52920.2 68416.m05833 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 177
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 157 SVQE*TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 336
+ E TT+ P + +FSS + +ED E + R +LS R A R+ E RE K
Sbjct: 3 TTNEATTQPPQQMMSLSFSSQMSKEDEE--MARSALSAFR--AKEDEIEKRKMEVRERVK 58
Query: 337 SATGQ 351
+ G+
Sbjct: 59 AQLGR 63
>At3g52920.1 68416.m05832 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 180
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 157 SVQE*TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 336
+ E TT+ P + +FSS + +ED E + R +LS R A R+ E RE K
Sbjct: 3 TTNEATTQPPQQMMSLSFSSQMSKEDEE--MARSALSAFR--AKEDEIEKRKMEVRERVK 58
Query: 337 SATGQ 351
+ G+
Sbjct: 59 AQLGR 63
>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 362
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 147 GIFLGFLTYWYTKRPPGVRTILLWFDF 67
G+ L TYWY K + LL FDF
Sbjct: 197 GVSLNGDTYWYAKDKESIDWYLLCFDF 223
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 160 VQE*TTRYPAREARRAFSSLLPQED 234
V E TTRYP ++ARRA L D
Sbjct: 1145 VPEETTRYPVKKARRAEEEQLRSND 1169
>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 213 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 121
+ER + GW P+ L+L P +G GFLT+
Sbjct: 347 KERGLLIKGWAPQVLILSHPSVG---GFLTH 374
>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 213 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 121
+ER + GW P+ L+L P +G GFLT+
Sbjct: 347 KERGLLIKGWSPQVLILSHPSVG---GFLTH 374
>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 491
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 213 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 121
+ER + GW P+ L+L P +G GFLT+
Sbjct: 342 KERGLLITGWSPQMLILTHPAVG---GFLTH 369
>At1g32585.1 68414.m04021 VQ motif-containing protein-related
contains weak similarity to Pfma:PF05678 VQ motif
Length = 220
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +3
Query: 63 TQSQTKGE*YELLEVAWYTSMLRNLRRSRGVVSARVNYAVSSPRGPQSVLVSAT 224
TQS + +E +W+ + + + + S RV+Y P P S T
Sbjct: 142 TQSMPQSNGFEPFPSSWFNGSTQEMHGASSLQSTRVDYEYPLPLTPNFTFSSMT 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,879
Number of Sequences: 28952
Number of extensions: 153162
Number of successful extensions: 499
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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