Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A01
(455 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 179 2e-44
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 112 4e-24
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 96 3e-19
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 89 6e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 80 2e-14
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 63 2e-09
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 52 4e-06
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 52 6e-06
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 41 3e-05
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 48 1e-04
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 44 0.001
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 44 0.002
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 42 0.006
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 41 0.015
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 40 0.034
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 39 0.059
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 38 0.077
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 38 0.14
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 38 0.14
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 36 0.55
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 35 0.72
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 35 0.72
UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2; ... 35 0.95
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 34 1.7
UniRef50_Q8V7F6 Cluster: ORF4; n=27; Torque teno virus|Rep: ORF4... 32 5.1
UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1; ... 32 5.1
UniRef50_A0BCG5 Cluster: Chromosome undetermined scaffold_10, wh... 32 5.1
UniRef50_Q980J1 Cluster: Chorismate mutase/prephenate dehydratas... 32 5.1
UniRef50_Q2HHY9 Cluster: Predicted protein; n=1; Chaetomium glob... 32 6.7
UniRef50_O15595 Cluster: 60S ribosomal protein L6; n=5; Entamoeb... 32 6.7
UniRef50_UPI0000F1ED4A Cluster: PREDICTED: hypothetical protein;... 31 8.9
UniRef50_Q9LVG8 Cluster: Putative F-box protein At5g60060; n=1; ... 31 8.9
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 179 bits (436), Expect = 2e-44
Identities = 86/115 (74%), Positives = 93/115 (80%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
NYDLGNGV+RFSKS+M+HKKA YKF+G TVVVKQIGGEKNGGTRTV LK
Sbjct: 31 NYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLK 90
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLVGV 455
RKSFYPTQ+KIR S G+ FSKHVRR RPNL GTVCILLAGRHAGKRVVLVG+
Sbjct: 91 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 145
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 112 bits (269), Expect = 4e-24
Identities = 57/115 (49%), Positives = 73/115 (63%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N L G+LR+SK++MY ++A+Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLVGV 455
K+ YPT+ ++ R +FS+H R TR NLTPGTV ILLAGRH GKRVVL+ V
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKV 137
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 96.3 bits (229), Expect = 3e-19
Identities = 52/116 (44%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Frame = +3
Query: 120 LGNGVLRFSKSRMYHKKAIYK----FVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLL 287
L G+ R+S+S MY +KA+YK V K +GG+KNGGTR V L
Sbjct: 50 LVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKL 109
Query: 288 KSRKSFYPTQDKIRGR-SHGKS-FSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
+ +YPT+D R SHGK FS+HVR+ R ++TPGT+ I+L GRH GKRVV +
Sbjct: 110 RKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 88.6 bits (210), Expect = 6e-17
Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N+ L GV FS+S+M+HK+ ++K V VK++ GEKNGG R + LK
Sbjct: 27 NHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLK 86
Query: 291 SRKSFYPTQDKIRGR--SHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
+ YPT+D + + SH K S+ R +TPGTV ILLAG H GKRVV +
Sbjct: 87 KERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFL 141
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 80.2 bits (189), Expect = 2e-14
Identities = 45/113 (39%), Positives = 64/113 (56%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N +L G+ R+S+S +Y K+A+YK T K IGG+KNGG R V ++
Sbjct: 12 NPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQ 70
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
+YPT+D R ++ K + + R ++TPGTV ILLAG H GKRVV +
Sbjct: 71 RESRYYPTEDVRRRLANRKK--PGMAKLRSSITPGTVLILLAGAHRGKRVVFL 121
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 63.3 bits (147), Expect = 2e-09
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +3
Query: 231 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSF-SKHVRRTRPNLTPGTVCI 407
V+ K+IGG+KNGGTR V + FYP + + R H + +K+ + R +L PGT+ I
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSR-QKRFHRRLVNNKNPPKIRKSLQPGTILI 102
Query: 408 LLAGRHAGKRVVLV 449
LLAG + GKRVVL+
Sbjct: 103 LLAGVNRGKRVVLL 116
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 52.4 bits (120), Expect = 4e-06
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 231 VVVKQIGGEKNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCIL 410
++ K IGG KNGG R V K +YP DK K+ K + RP++ GT+ IL
Sbjct: 22 MIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPT-KLRPSIKSGTIVIL 80
Query: 411 LAGRHAGKRVVLV 449
LAG G RVV++
Sbjct: 81 LAGVFRGSRVVVL 93
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 52.0 bits (119), Expect = 6e-06
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 252 GEKNGGTRTVLLKSRKSF---YPTQD---KIRGRSHGKSFSKHVRRTRPNLTPGTVCILL 413
G + T+ L+K + F Y TQ K+R R K FS HVR+ R ++ PGTV ILL
Sbjct: 42 GLRTPKTKEALVKPKTRFPRSYVTQQGKRKLRLR-RAKCFSNHVRKIRSSIQPGTVLILL 100
Query: 414 AGRHAGKRVVLV 449
AG H GKRV+ +
Sbjct: 101 AGPHKGKRVIFL 112
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 40.7 bits (91), Expect(2) = 3e-05
Identities = 26/64 (40%), Positives = 31/64 (48%)
Frame = +3
Query: 258 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 437
K G + K + P + G SK V R LTPGTV I+LAGRH GKR
Sbjct: 31 KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88
Query: 438 VVLV 449
VV +
Sbjct: 89 VVFL 92
Score = 28.7 bits (61), Expect(2) = 3e-05
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKK 170
N+DL GVLRFS SR+ KK
Sbjct: 13 NFDLSPGVLRFSASRLRLKK 32
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 48.0 bits (109), Expect = 1e-04
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 228 TVVVKQIGGEKN--GGTRTVLLKSRKS--FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPG 395
T+ K +G K G R + S+K+ +YP D+ + + K+ H + RP+L PG
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARKT--AHPTKLRPSLQPG 61
Query: 396 TVCILLAGRHAGKRVVLV 449
T+ ILLAGR GKRV+L+
Sbjct: 62 TILILLAGRFRGKRVILL 79
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +3
Query: 351 FSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
F+ H RR R ++TPG V ILLAGRH KRVV +
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFL 118
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 44.0 bits (99), Expect = 0.002
Identities = 33/113 (29%), Positives = 53/113 (46%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N DL GV ++S+S+MYHK+ ++ + V + +
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV-------------E 59
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
FYP +D ++ + +K + R ++TPGTV I+LAGR GKRVV +
Sbjct: 60 KPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFL 110
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 41.9 bits (94), Expect = 0.006
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +3
Query: 120 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 299
L G R+S +Y +K Y V V+K + G+KNGGT V L+ K
Sbjct: 53 LVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKLQKMK 110
Query: 300 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
+ + + +F KH + N TP TV I++ G+H +RVV +
Sbjct: 111 MYL---GSCKAMAKSPAF-KH-EKAVCNSTPETVLIIITGQH--RRVVFL 153
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 40.7 bits (91), Expect = 0.015
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +3
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
S FYP D ++ R + + R ++TPGTV ILLAGR GKRVV +
Sbjct: 49 SAPKFYPADD-VKPRQPSTR-KPNPTKLRSSITPGTVLILLAGRFMGKRVVFL 99
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 39.5 bits (88), Expect = 0.034
Identities = 25/59 (42%), Positives = 32/59 (54%)
Frame = +3
Query: 267 GTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVV 443
G R + K+ K +IR + K K R ++TPGTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVV 110
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 38.7 bits (86), Expect = 0.059
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 372 TRPNLTPGTVCILLAGRHAGKRVVLV 449
++P + PG VCI+L GRHAGK+ V+V
Sbjct: 2 SQPIIKPGLVCIVLQGRHAGKKAVIV 27
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 38.3 bits (85), Expect = 0.077
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 303 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVV 443
+YP++D + K+ ++ R +L PGTV ILLAGR GKRVV
Sbjct: 9 WYPSEDVAALKKTRKA--ARPQKLRASLVPGTVLILLAGRFRGKRVV 53
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 37.5 bits (83), Expect = 0.14
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 369 RTRPNLTPGTVCILLAGRHAGKRVVLV 449
+ R +L PG VCILLAG + GKRVV++
Sbjct: 34 KLRSSLQPGVVCILLAGPYKGKRVVML 60
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 37.5 bits (83), Expect = 0.14
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +3
Query: 375 RPNLTPGTVCILLAGRHAGKRVVLV 449
R L PGTV ILLAGR GKRVVL+
Sbjct: 36 RSTLVPGTVLILLAGRFRGKRVVLL 60
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 35.5 bits (78), Expect = 0.55
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 342 GKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLVGV 455
G+ ++ V + R +L PG V ILL G + GKRVVL+ V
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKV 67
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 35.1 bits (77), Expect = 0.72
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +3
Query: 234 VVKQIGGEKNGGTRTVLLKSRKSFYPTQDK--IRGRSHGKSFS---KHV--RRTRPNLTP 392
VV G +KN V+ +K P + K I + +G+ + K V R+ R ++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 393 GTVCILLAGRHAGKRVVLVGV 455
G V I+L G+H GKR ++ V
Sbjct: 77 GKVAIILTGKHMGKRCIIAKV 97
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 35.1 bits (77), Expect = 0.72
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 372 TRPNLTPGTVCILLAGRHAGKRVVLV 449
TRP+L GTV I++ G H GKR V+V
Sbjct: 52 TRPSLKVGTVVIVVGGEHQGKRAVVV 77
>UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2;
Zymomonas mobilis|Rep: Putative uncharacterized protein
- Zymomonas mobilis
Length = 390
Score = 34.7 bits (76), Expect = 0.95
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 326 DLVLSGVE*FPAFQQDCTSASILFTAYLLNHDGWFLG 216
+ LS + F A QD TSA I + YLL H WF G
Sbjct: 339 EYALSDIVYFGALLQDKTSADIAYYDYLLGHSRWFSG 375
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 33.9 bits (74), Expect = 1.7
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 381 NLTPGTVCILLAGRHAGKRVVLV 449
++TP TV I+L GRH GKRVV +
Sbjct: 8 SITPQTVLIILTGRHRGKRVVFL 30
>UniRef50_Q8V7F6 Cluster: ORF4; n=27; Torque teno virus|Rep: ORF4 -
Torque teno virus
Length = 280
Score = 32.3 bits (70), Expect = 5.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 150 FWRNGVHRFRGHNSLGLPNFLLLDTAGCGCGGFLRHL 40
+WR VH G L + A CGCG F+RH+
Sbjct: 3 YWRPPVHNVPGLEHLWYESVHRSHAAVCGCGDFVRHI 39
>UniRef50_Q1JVH7 Cluster: Putative uncharacterized protein; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Putative
uncharacterized protein - Desulfuromonas acetoxidans DSM
684
Length = 181
Score = 32.3 bits (70), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 263 WRHSYSPAEKQEIILPHSGQDQGSFSWQE 349
W + PA +Q ++L +SG+D GS W +
Sbjct: 66 WAIQFDPAGRQYVVLSNSGEDAGSEDWTD 94
>UniRef50_A0BCG5 Cluster: Chromosome undetermined scaffold_10, whole
genome shotgun sequence; n=8; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_10,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1051
Score = 32.3 bits (70), Expect = 5.1
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 384 LTPGTVCILLAGRHAGKRVVLV 449
L PG + +LLAGR+AGK+ +L+
Sbjct: 904 LKPGRLIVLLAGRYAGKKAILI 925
>UniRef50_Q980J1 Cluster: Chorismate mutase/prephenate dehydratase,
putative; n=1; Sulfolobus solfataricus|Rep: Chorismate
mutase/prephenate dehydratase, putative - Sulfolobus
solfataricus
Length = 346
Score = 32.3 bits (70), Expect = 5.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 215 LFSFRVLLTDKLIYSLLVVHPAFGETEYTVSE--VIIPS 105
+F F L+ KL + + HP FG EY + E VIIPS
Sbjct: 188 IFGFLEELSRKLEFRYISTHPLFGPIEYPIGERVVIIPS 226
>UniRef50_Q2HHY9 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 838
Score = 31.9 bits (69), Expect = 6.7
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 181 SLSVRRTRKLKSPRNQPSWLSK*AVK-RMEALVQSC*KAGNHSTPLRTR 324
+L VR R+ +SP PSW +V R E +V + AG+ PLRTR
Sbjct: 169 ALGVRTPRRRESPGGLPSWWLVGSVPFRQEIVVTARSVAGDGHAPLRTR 217
>UniRef50_O15595 Cluster: 60S ribosomal protein L6; n=5; Entamoeba
histolytica|Rep: 60S ribosomal protein L6 - Entamoeba
histolytica
Length = 92
Score = 31.9 bits (69), Expect = 6.7
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Frame = +3
Query: 300 SFYPTQD-------KIRGRSHGK--SFSK---HVRRTRPNLTPGTVCILLAGRHAGKRVV 443
++YPT D K+R R K + K ++ + R ++ PG + I++ G++AGK+VV
Sbjct: 18 AYYPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGKKVV 77
>UniRef50_UPI0000F1ED4A Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 184
Score = 31.5 bits (68), Expect = 8.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 106 EGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPS 234
EG+ T + SVSP+ TT +L ++L+V RN+PS
Sbjct: 91 EGVYTCHLIVSVSPRVSKTT-KLKVNLTVSEKASTHDYRNEPS 132
>UniRef50_Q9LVG8 Cluster: Putative F-box protein At5g60060; n=1;
Arabidopsis thaliana|Rep: Putative F-box protein
At5g60060 - Arabidopsis thaliana (Mouse-ear cress)
Length = 374
Score = 31.5 bits (68), Expect = 8.9
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 118 TSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 297
+S+T++ + ++ C T RL + LS + R K P+ P W S + L QS
Sbjct: 30 SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87
Query: 298 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 402
PL R+ +V + + + DL S C
Sbjct: 88 KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,829,517
Number of Sequences: 1657284
Number of extensions: 9327296
Number of successful extensions: 22924
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 22332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22911
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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