Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A01
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   4.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.5  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 270 TRTVLLKSRKSFYPTQ----DKIRGRSHGKSFSKHVRRTRPNLTPG 395
           TRT L  +R S YP Q      +    H  +   H+++  P   PG
Sbjct: 256 TRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPG 301


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -3

Query: 75  AGCGCGGFLRHLGLW-WSP 22
           A   C G +RH G W +SP
Sbjct: 62  AAYDCEGVIRHHGQWNYSP 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,566
Number of Sequences: 336
Number of extensions: 2249
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)