Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A01
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 51 1e-07
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.59
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 28 0.78
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 27 1.0
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 27 1.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 2.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.2
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 7.3
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 24 9.6
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 9.6
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 9.6
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 50.8 bits (116), Expect = 1e-07
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 243 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 410
++ G KNGG R VL ++ +YP + + K K VR T R +L PGTVCIL
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 411 LAGRHAGKRVVLV 449
LAGR GKRVV++
Sbjct: 61 LAGRFRGKRVVVL 73
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.59
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 121 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 231
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 0.78
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 384 LTPGTVCILLAGRHAGKRVVLV 449
L PG V ++ GR AGK+VV++
Sbjct: 5 LKPGKVALITRGRFAGKKVVIL 26
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 384 LTPGTVCILLAGRHAGKRVVLV 449
L PG V ++ GR AGK+VV++
Sbjct: 5 LKPGKVALVTRGRFAGKKVVIL 26
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +3
Query: 273 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 392
RT+L + K FYP GR H SK R+ R TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -1
Query: 176 YSLLVVHP---AFGETEYTVSEVIIPSVC 99
YSL V+H FG+T+YT+S +++ SVC
Sbjct: 1006 YSLSVLHLDGIKFGDTQYTISGMLM-SVC 1033
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 300 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 437
+FY R SH S S ++P LT + +L + H +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 222 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 136
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 249 GGEKNGGTRTVLLKSRKSFYPTQDKIRGRSH 341
GGEKNG L S S+ T + RSH
Sbjct: 308 GGEKNGEAPLEALLSLLSYINTHQRQSERSH 338
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 320 VLSGVE*FPAFQQDCTSASILFTAYL 243
VLSG++ Q++CT ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 304 NDFLLFSRTVRVPPFFSPPICLT 236
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,102
Number of Sequences: 5004
Number of extensions: 37867
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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