Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A01
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    45   3e-05
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    41   5e-04
02_02_0470 - 10700092-10700505                                         30   1.0  
10_08_0951 - 21769342-21769752                                         29   2.3  
01_07_0229 + 42161770-42164562                                         28   3.1  
10_08_0974 + 21969713-21971914                                         27   7.2  
10_05_0023 + 8171023-8171782,8172658-8172950                           27   9.5  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    27   9.5  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 32/69 (46%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
 Frame = +3

Query: 258 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGR 422
           KNGGT     K    +   FYP  D K R  S  K+    +R T   +TPGTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87

Query: 423 HAGKRVVLV 449
           + GKRVV +
Sbjct: 88  YMGKRVVFL 96


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
 Frame = +3

Query: 120 LGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRK 299
           L  G+ + S+S  YH++ ++  +                       K      V  +   
Sbjct: 7   LSQGIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPS 65

Query: 300 SFYPTQDKIRGRSHGK----SFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
           +  P   K+R  S       S  + +   R ++TPGTV ILLAGR  GKRVV +
Sbjct: 66  TRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFL 119


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 384 LTPGTVCILLAGRHAGKRVVLVGV 455
           L PG   ILL GR+AG++ V+V V
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRV 28


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 LTPGTVCILLAGRHAGKRVVLVGV 455
           L PG   ILL GR AG++ V+V V
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRV 28


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 124 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 216
           +T  + SPKA  T R+ Y+S S+R T  LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920


>10_08_0974 + 21969713-21971914
          Length = 733

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 275 YSPAEKQEIILPHSGQDQGSFSWQEFQ*TCA*DET 379
           Y P+ K +++    G +QG+ SW EF  T   D+T
Sbjct: 364 YRPS-KSDVVGGEDGVEQGNTSWPEFVPTSGPDKT 397


>10_05_0023 + 8171023-8171782,8172658-8172950
          Length = 350

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 441 RHACQRVCPPTECTLCRE*G*VSSYAHVY*NSCHE-NDP*SCPEWGRMISCF 289
           RH  +       CT C E G V+S        C E + P  CP   R ++CF
Sbjct: 201 RHLGEEEMESKACTRCGEIGHVASMCLTLCTHCEEDHPPGECPT--RKVTCF 250


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 441 RHACQRVCPPTECTLCRE*G*VSSYAHVY*NSCHE-NDP*SCPEWGRMISCF 289
           RH  +       CT C E G V+S        C E + P  CP   R ++CF
Sbjct: 582 RHLGEEEMESKACTRCGEIGHVASMCLTLCTHCEEDHPPGECPT--RKVTCF 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,603
Number of Sequences: 37544
Number of extensions: 284708
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)