Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A01
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_44729| Best HMM Match : SET (HMM E-Value=0)                         27   7.4  
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 27   7.4  
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   7.4  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   9.7  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   9.7  

>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 284  QDCTSASILFTAYLLNHDGWFLGLFSFRVLLTDKLI 177
            +D T  S+LFT YL   D  FL     R+ L DK++
Sbjct: 1065 EDTTPTSLLFTVYLDYDDDKFLNDVKVRLGLVDKIV 1100


>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 342  HENDP*SCPEWGRMISCFSAGLYECLH 262
            HE+D   C + G++I C  +G  +C H
Sbjct: 974  HEDDCFICGDGGQLIMCDRSGCLKCYH 1000


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -3

Query: 204 SGSSYRQTYI*PSCGTSCFWRNGVHRFRGHNSLGLPNFLLLDTAGCGCGGFLRHLGLW 31
           SG SY  +Y+  + G+S F   G +  +   S GLP     +T    C     + G W
Sbjct: 42  SGGSYDWSYL--NSGSSRFTYEGRNADKSSLSYGLPELKGTETDTSACSRIAGNTGYW 97


>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 422

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = -1

Query: 404 AHCAGSEVRSRPTHMFTETLAMRTTPDLVLSGVE*FPAFQQDCTSASILFTAYLLNHDGW 225
           AHC GSE +   + + T+ +  R   +L +   +     + +  S   +F A +L  D +
Sbjct: 340 AHCLGSETKEHSSRISTDGMD-RVVNELKVLTSKVHEEEKSNKISEDWIFAAEVL--DRF 396

Query: 224 FLGLFSFRVLLTDKLIYSLLVVHP 153
           F+ LFS  +++T   + S+ V  P
Sbjct: 397 FMLLFSVTIVIT---VISVFVASP 417


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 24/67 (35%), Positives = 32/67 (47%)
 Frame = -2

Query: 430  PACLPANRMHTVPGVRLGLVLRTCLLKLLP*ERPLILS*VG*NDFLLFSRTVRVPPFFSP 251
            P+CLP+ + H  P     L + T L+ L+P       S +    F L+ RT RVPP    
Sbjct: 1388 PSCLPSTQEHASP-----LFVFTLLVYLVPQNTRTPCSCLP-FLFTLYPRT-RVPPVRVY 1440

Query: 250  PICLTTT 230
            P CL  T
Sbjct: 1441 PSCLPCT 1447


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 297 KSFYPTQDKIRGRSHGKSFSKHVR 368
           ++  PT+++IR  SHG++ + H++
Sbjct: 372 RNVQPTENRIRKESHGRTIALHLK 395


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 389  SEVRSRPTHMFTETLAMRTTPDLVLSGVE*FPAFQQD 279
            S  +SR   + TET  +R     + SGV+ FP  Q+D
Sbjct: 2341 SSAKSRYERVETETTIVRDAGGQLESGVDMFPDMQED 2377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,438
Number of Sequences: 59808
Number of extensions: 304986
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)