Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A01
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    41   9e-07
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 40.7 bits (91), Expect(2) = 9e-07
 Identities = 26/64 (40%), Positives = 31/64 (48%)
 Frame = +3

Query: 258 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 437
           K G  +    K   +  P   +  G       SK V   R  LTPGTV I+LAGRH GKR
Sbjct: 31  KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88

Query: 438 VVLV 449
           VV +
Sbjct: 89  VVFL 92



 Score = 28.7 bits (61), Expect(2) = 9e-07
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 111 NYDLGNGVLRFSKSRMYHKK 170
           N+DL  GVLRFS SR+  KK
Sbjct: 13  NFDLSPGVLRFSASRLRLKK 32


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 303 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 437
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
 Frame = +3

Query: 276 TVLLKSRKSFYP-------TQDKIRGRSHGKSFSKHVRRTRPNLTPGTV 401
           T   K RKSF P       TQ    G++ GK+  K      P L+P  +
Sbjct: 480 TTTKKPRKSFSPGSATPKHTQPSENGKASGKTVGKEKESNSPELSPNVI 528


>AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.7 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +3

Query: 261 NGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKH-VRRTRPNLTPGTVCILLAGRHAG 431
           NG   ++    R       D I GR    S S   VRR  P   PG +   +   H G
Sbjct: 243 NGHVSSMTRHQRHLATSINDVINGRQVTSSMSSELVRRAMPRHPPGGIATSIVSEHRG 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,909,347
Number of Sequences: 27780
Number of extensions: 223636
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)