Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A01
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.2  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   3.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 119 PRKRCTPFLQKQDVPQEGYI 178
           PRKRC   L+  ++ + G I
Sbjct: 466 PRKRCKMILESMEIERNGLI 485


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 414 PTECTLCRE*G*VSSY 367
           PTEC  CR  G   +Y
Sbjct: 37  PTECVFCRNNGEEEAY 52


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 255 EKNGGTRTVLLKSRKSFYPTQDKIR 329
           EKNG T   + K    F P + K+R
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLR 191


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 389 SRHSVHSVGGQTRWQAC 439
           S+ SVH   GQT  Q C
Sbjct: 366 SQTSVHYSNGQTHSQLC 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,381
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)