Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A01
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 44 5e-05
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 44 5e-05
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 41 5e-04
At5g60060.1 68418.m07531 F-box family protein various predicted ... 31 0.28
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 28 3.4
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 28 3.4
At4g09180.1 68417.m01519 basic helix-loop-helix (bHLH) family pr... 27 4.5
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 4.5
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.9
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 27 7.9
At1g71015.1 68414.m08194 expressed protein 27 7.9
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 44.0 bits (99), Expect = 5e-05
Identities = 33/113 (29%), Positives = 53/113 (46%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N DL GV ++S+S+MYHK+ ++ + V + +
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV-------------E 59
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
FYP +D ++ + +K + R ++TPGTV I+LAGR GKRVV +
Sbjct: 60 KPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFL 110
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 44.0 bits (99), Expect = 5e-05
Identities = 33/113 (29%), Positives = 53/113 (46%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N DL GV ++S+S+MYHK+ ++ + V + +
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPV-------------E 59
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
FYP +D ++ + +K + R ++TPGTV I+LAGR GKRVV +
Sbjct: 60 KPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFL 110
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 40.7 bits (91), Expect = 5e-04
Identities = 33/113 (29%), Positives = 51/113 (45%)
Frame = +3
Query: 111 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 290
N DL GV ++S+S+MYHK+ ++ V + EK
Sbjct: 13 NPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPV--EKPA-------- 62
Query: 291 SRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRVVLV 449
FYP +D + + + + + ++TPGTV I+LAGR GKRVV +
Sbjct: 63 ---KFYPAEDVKKPLVNRRK--PKPTKLKASITPGTVLIILAGRFKGKRVVFL 110
>At5g60060.1 68418.m07531 F-box family protein various predicted
proteins, Arabidopsis thaliana ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 374
Score = 31.5 bits (68), Expect = 0.28
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 118 TSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEALVQSC*KAG 297
+S+T++ + ++ C T RL + LS + R K P+ P W S + L QS
Sbjct: 30 SSDTIHLLCLRSVCATWRLSLPLSNKNNRLSKFPKYLPFWSSSSSSSGFFTLKQS--NVY 87
Query: 298 NHSTPLRTRSGVVLMARVSVNMCVGRDLTSLPAQC 402
PL R+ +V + + + DL S C
Sbjct: 88 KLEAPLNPRTCLVKLQETTPGIMRVLDLFSNDRIC 122
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 444 ARHACQRVCPPTECTLCRE 388
ARHAC+R C EC C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 384 LTPGTVCILLAGRHAGKRVVLV 449
+ PG ILL GR+ GK+ V+V
Sbjct: 5 MKPGKAVILLQGRYTGKKAVIV 26
>At4g09180.1 68417.m01519 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 262
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 106 EGIMTSETVYSVSPKAGCTTRRLYISLSVRRTR 204
E +M + V K GC T I+ VRRTR
Sbjct: 173 ENLMEDSVAFRVRAKRGCATHPRSIAERVRRTR 205
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 378 VSSYAHVY*NSCHENDP*SCPEWGRMI 298
+ +A V +SC+END SC W +I
Sbjct: 345 LKQFAQVLKSSCNENDTLSCTLWDSLI 371
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 26.6 bits (56), Expect = 7.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 263 WRHSYSPAEKQEIILPHSGQDQG 331
++H+YS +E++L H G +G
Sbjct: 281 YKHAYSDGHLEEVVLRHLGSQEG 303
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 26.6 bits (56), Expect = 7.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 263 WRHSYSPAEKQEIILPHSGQDQG 331
++H+YS +E++L H G +G
Sbjct: 281 YKHAYSDGHLEEVVLRHLGSQEG 303
>At1g71015.1 68414.m08194 expressed protein
Length = 195
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 139 VSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK*AVKRMEAL 273
+ P ++R+Y + + RT K ++PR S + A +R+E L
Sbjct: 57 LEPHQNLESKRIYFMVELPRTWKERTPRRVRSGIQMSAKERLENL 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,372
Number of Sequences: 28952
Number of extensions: 212619
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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