Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P24
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 173 2e-44
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 173 2e-44
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 168 5e-43
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.67
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 3.5
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 26 4.7
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 173 bits (421), Expect = 2e-44
Identities = 79/131 (60%), Positives = 101/131 (77%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
++A KKR+ I KRAE Y EYR ER++I L R+AR GNYYVP E KL FVIRIRG+N
Sbjct: 42 KAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGIN 101
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+VREL+YKRGF
Sbjct: 102 NIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGF 161
Query: 557 AKLNGKRVPIT 589
K+N +R+ ++
Sbjct: 162 GKVNKQRIALS 172
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 173 bits (420), Expect = 2e-44
Identities = 79/148 (53%), Positives = 107/148 (72%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYY 325
K + S + + + +SA KKR+ I KRAE Y EYR ER++I LAR+AR GNY+
Sbjct: 24 KAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYF 83
Query: 326 VPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAW 505
VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +
Sbjct: 84 VPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTY 143
Query: 506 GYPNLKSVRELVYKRGFAKLNGKRVPIT 589
G PN K+VREL+YKRGF K+N +R+P++
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLS 171
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 168 bits (409), Expect = 5e-43
Identities = 77/131 (58%), Positives = 98/131 (74%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
+ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI GV
Sbjct: 40 KEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVK 99
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+YKRGF
Sbjct: 100 NMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGF 159
Query: 557 AKLNGKRVPIT 589
K+NG+R+ ++
Sbjct: 160 GKINGQRIALS 170
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.67
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 206 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 319
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 302 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 421
+ N+G YY G +AFV I GV + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 177 SDHTQLCVPLPLRRGKKSLREPNNMSKNTASRSVMKS 287
S H VP LR+ L+ NN+S+ AS +++ S
Sbjct: 779 SSHLLDSVPNALRQAPIGLKNTNNLSERNASSNLLNS 815
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 236 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 337
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 194 MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 310
+R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 66 VRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,780
Number of Sequences: 5004
Number of extensions: 47070
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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