Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P24
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 179 2e-45
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 176 1e-44
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 96 2e-20
12_01_0661 + 5596739-5597047,5597125-5597703 32 0.30
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.52
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 29 2.7
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 3.6
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 6.3
03_02_0002 + 4853886-4854812 27 8.4
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 179 bits (435), Expect = 2e-45
Identities = 79/131 (60%), Positives = 106/131 (80%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
+ SI+ RK IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRG+N
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 96 AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155
Query: 557 AKLNGKRVPIT 589
KLN +R+P+T
Sbjct: 156 GKLNKQRIPLT 166
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 176 bits (428), Expect = 1e-44
Identities = 77/130 (59%), Positives = 106/130 (81%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
+ +++ RK IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRG+N
Sbjct: 37 KKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGIN 96
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 97 AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 156
Query: 557 AKLNGKRVPI 586
KLN +R+P+
Sbjct: 157 GKLNKQRIPL 166
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Frame = +2
Query: 221 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPK 391
K KR E +V+E+R KE D +R+ + + R P E +KL F IRI G + P
Sbjct: 46 KGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPH 103
Query: 392 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNG 571
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163
Query: 572 KRVPIT 589
+ P+T
Sbjct: 164 EPFPLT 169
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 177 SDHTQLCVPLPLRRGKKSLREPNNMSKNTASRS 275
+D TQL PL R KK R NN +KN +SR+
Sbjct: 167 NDDTQLEEESPLNRNKKRPRHANNANKNKSSRT 199
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 373 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 218
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 300 CLANLISSRSLMRYSLTYCSALLKISFLFLMEAERIIE 187
CL N+ S + +LTY SAL K++ + AER +E
Sbjct: 720 CLENVTSIGEVDVVNLTYKSALSKLALAWTPAAERFVE 757
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 213 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 317
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 373 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 218
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
>03_02_0002 + 4853886-4854812
Length = 308
Score = 27.5 bits (58), Expect = 8.4
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Frame = +2
Query: 146 KGGRHSELAV-FRSHSIMRS-----ASIKKR-KEIFKRAEQYVKEYRIKERDEIRLA--- 295
K G+ S LAV FR+ S M A+I+ R KE+FK+ E+ R++ RD A
Sbjct: 105 KSGQDSSLAVAFRAISDMADRLQLVATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLH 164
Query: 296 RQARNRGN 319
RN GN
Sbjct: 165 IACRNEGN 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,121,910
Number of Sequences: 37544
Number of extensions: 324330
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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