Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P24
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 203 1e-52
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035) 30 1.2
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 29 2.8
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 6.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 8.6
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5) 27 8.6
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 203 bits (495), Expect = 1e-52
Identities = 94/125 (75%), Positives = 111/125 (88%)
Frame = +2
Query: 215 KRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKV 394
KRKEIFKRAE+YVKEYR KE DE+R+ + A+ GN+YVP EA+LAFVIRIRG+N VSPKV
Sbjct: 43 KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKV 102
Query: 395 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGK 574
RK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +
Sbjct: 103 RKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQ 162
Query: 575 RVPIT 589
RV +T
Sbjct: 163 RVALT 167
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 149 GGRHSELAVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 322
G + L R +I R + +R+EI++R E Y + + R+ RL R R Y
Sbjct: 11 GSENYFLPNLRRRAINRRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 170 AVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 322
A+ R + R I +R+E+++R E Y + + R+ R R R Y
Sbjct: 24 AINRRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMYRRREMY 74
>SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)
Length = 277
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 123 GISLEAP*K---EGGTPSSPSSDHTQLCVPLPLRRGKKSLREPNNMSKNTASRSVMKSDW 293
G LEA K E G +S DH QL VPL R+ K++ N M + SV S +
Sbjct: 111 GYKLEAVRKLELEEGMENSDEEDHRQLHVPLRRRKAKRTNHFRNKMENWENAESVNLS-Y 169
Query: 294 QD 299
QD
Sbjct: 170 QD 171
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 578 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 432
HA V R P +S + +P Q ++RY A S PC ER C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 581 GHASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACS 468
GH S++V R P+ +S + +P Q ++RY A S
Sbjct: 574 GHTSKNVNSERYHAPSQVNSERYNAPNQVNSERYNAPS 611
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 141 P*KEGGTPSSPSSDHTQLCVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQD 299
P + G P + Q P P ++ +K R+ + +K ASR S QD
Sbjct: 84 PARAGQATRKPQDQNKQAARPRPRQKSRKIKRQASRKTKRQASRKTNTSKRQD 136
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 351 LSSVFVVSTKYHPRYARYCSCSGCVRS 431
L S+FV +T RY YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 287 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 400
RL R + R NYY+ + +AF + I V + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 194 MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 322
+R +I +R+E+++R E Y + + R+ R R R Y
Sbjct: 15 LRRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 170 AVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 322
A+ R + R + +R+E+++R E Y + + R+ R R R Y
Sbjct: 19 AINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 69
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 179 RSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 322
R +I R + +R+E+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 63
>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 200 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 307
S +KRK +FK ++ K+ ++++ D +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 269 KERDEIRLARQARNRGNYYVP 331
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 182 SHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 346
S ++ + KK KE+ + Q ++ + + D RLA + R R +P + ++
Sbjct: 957 SSKLVTAMPRKKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011
>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
Length = 283
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 171 PSSDHTQLCVP--LPLRRGKKSLREPNNMSKNTASRSVMKSDWQDRLV 308
PS TQ C LP+ + SL PN NT R+V +Q +++
Sbjct: 122 PSQHQTQECQSEELPMPNHRLSLAAPNTGMSNTKHRNVKVRSFQCQII 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,320
Number of Sequences: 59808
Number of extensions: 380616
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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