Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P24
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   183   1e-46
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  183 bits (445), Expect = 1e-46
 Identities = 81/136 (59%), Positives = 112/136 (82%), Gaps = 1/136 (0%)
 Frame = +2

Query: 185 HSIMRSASIKKRK-EIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIR 361
           H +  +A  K++K + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+R
Sbjct: 31  HKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVR 90

Query: 362 IRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELV 541
           IRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+
Sbjct: 91  IRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLL 150

Query: 542 YKRGFAKLNGKRVPIT 589
           YKRG+AK++G RVPIT
Sbjct: 151 YKRGYAKVDGNRVPIT 166


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 198 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 290
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,365
Number of Sequences: 27780
Number of extensions: 275364
Number of successful extensions: 772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)