Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P24
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 178 2e-45
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 178 2e-45
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 176 8e-45
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 176 8e-45
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 176 8e-45
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 173 7e-44
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 107 7e-24
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.7
At5g45310.1 68418.m05562 expressed protein 28 4.0
At3g52860.1 68416.m05825 expressed protein 28 4.0
At5g59430.2 68418.m07448 telomere repeat-binding protein 1 (TRP1... 28 5.3
At5g59430.1 68418.m07447 telomere repeat-binding protein 1 (TRP1... 28 5.3
At1g31820.1 68414.m03908 amino acid permease family protein weak... 28 5.3
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04... 27 7.0
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 27 7.0
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 27 7.0
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 9.3
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 9.3
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 178 bits (434), Expect = 2e-45
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 99 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158
Query: 557 AKLNGKRVPIT 589
KLN +R+ +T
Sbjct: 159 GKLNHQRIALT 169
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 178 bits (434), Expect = 2e-45
Identities = 80/131 (61%), Positives = 105/131 (80%)
Frame = +2
Query: 197 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 376
+ S++ RK IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRG+N
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 377 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 556
+ PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153
Query: 557 AKLNGKRVPIT 589
KLN +R+ +T
Sbjct: 154 GKLNHQRIALT 164
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 176 bits (429), Expect = 8e-45
Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 2/150 (1%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 319
K R E A+ + + + + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G
Sbjct: 17 KRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGG 76
Query: 320 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 499
+YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 77 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
Query: 500 AWGYPNLKSVRELVYKRGFAKLNGKRVPIT 589
+GYPNLKSV+EL+YKRGF KLN +R +T
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 176 bits (429), Expect = 8e-45
Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 2/150 (1%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 319
K R E A+ + + + + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G
Sbjct: 17 KRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGG 76
Query: 320 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 499
+YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 77 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
Query: 500 AWGYPNLKSVRELVYKRGFAKLNGKRVPIT 589
+GYPNLKSV+EL+YKRGF KLN +R +T
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 176 bits (429), Expect = 8e-45
Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 2/150 (1%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 319
K R E A+ + + + + +KRK IF RA+QY KEY+ KER+ I+L R+A+ +G
Sbjct: 17 KRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGG 76
Query: 320 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 499
+YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 77 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
Query: 500 AWGYPNLKSVRELVYKRGFAKLNGKRVPIT 589
+GYPNLKSV+EL+YKRGF KLN +R +T
Sbjct: 137 TYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 173 bits (421), Expect = 7e-44
Identities = 81/150 (54%), Positives = 112/150 (74%), Gaps = 2/150 (1%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 319
K R E A+ + ++ + + + RK IFKRAEQY KEY KE++ I L R+A+ +G
Sbjct: 15 KRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGG 74
Query: 320 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 499
+YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 75 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYV 134
Query: 500 AWGYPNLKSVRELVYKRGFAKLNGKRVPIT 589
+G+PNLKSV+EL+YKRG+ KLN +R+ +T
Sbjct: 135 TYGFPNLKSVKELIYKRGYGKLNHQRIALT 164
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 107 bits (256), Expect = 7e-24
Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Frame = +2
Query: 146 KGGRHSELAVFRSHSIMRSASIKKRKEI--FKRAEQYVKEYRIKERDEIRLARQARNRGN 319
K ELA R + S KK+K++ KR E +V E+R KE D IR+ ++ + +
Sbjct: 19 KRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKS 78
Query: 320 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 499
P ++ L F+IRI+G N + PK +++L +L+ + GVF + + L +PY+
Sbjct: 79 SPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYV 138
Query: 500 AWGYPNLKSVRELVYKRGFAKLNGKRVPIT 589
+GYPN KSV++L+YK+G + G VP+T
Sbjct: 139 TYGYPNDKSVKDLIYKKGCTIIEGNPVPLT 168
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 387 GDTWLTPRIRMTNASLASPGT 325
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 218 RKEIFKRAEQYVKEYRIKERD 280
RKEI K + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 164 ELAVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEI 286
++AV + IKK +F+ +++ VKE K RDE+
Sbjct: 113 DIAVMEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g59430.2 68418.m07448 telomere repeat-binding protein 1 (TRP1)
identical to telomere repeat-binding protein TRP1
[Arabidopsis thaliana] GI:5459298
Length = 578
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 149 GGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKER 277
G RHS+ +R++ + RS IKKRK ++ +YR++ +
Sbjct: 229 GSRHSDTKPWRNYYLHQQRSYPIKKRKNFDHISDSVTDDYRMRTK 273
>At5g59430.1 68418.m07447 telomere repeat-binding protein 1 (TRP1)
identical to telomere repeat-binding protein TRP1
[Arabidopsis thaliana] GI:5459298
Length = 578
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 149 GGRHSELAVFRSHSI--MRSASIKKRKEIFKRAEQYVKEYRIKER 277
G RHS+ +R++ + RS IKKRK ++ +YR++ +
Sbjct: 229 GSRHSDTKPWRNYYLHQQRSYPIKKRKNFDHISDSVTDDYRMRTK 273
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 277 TLLDAVFFDILFGSLKDFFPLLNGSG 200
TL A+ + ++F +L +F PLL+G+G
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTG 270
>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 579
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 221 KEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 400
KEI ++ + V E IK +D + R+ +RG Y V++I Q+ + R+
Sbjct: 295 KEIVRKIKMLVTEPEIKPQDGFKYRREEFDRGWYDCLKSLSSLEVLKIFAFTQLEDRSRE 354
Query: 401 V 403
+
Sbjct: 355 I 355
>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
protein / CBS domain-containing protein similar to
SP|Q47334 Polysialic acid capsule expression protein
kpsF {Escherichia coli}; contains Pfam profiles PF01380:
sugar isomerase (SIS) domain, PF00571: CBS domain
Length = 350
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 340 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSG 200
+F + + T+ SLS +S F++ LDA+ DI S +D + SG
Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSG 126
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to X4 protein GI:21386798,
Y4 protein GI:21386800 from [Silene dioica]; contains
Pfam profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 144 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 46
TVLQ +RN WQ+ + T H L + LFCS
Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -3
Query: 551 RVCTPTL--GHSSSWGSPMQYRAQ 486
RVC+ + H SWGSP RAQ
Sbjct: 57 RVCSASTRWSHGGSWGSPASLRAQ 80
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 149 GGRHSELAVFRSHSIMRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 298
GG+H A HS+ + A + +K + + +K YR+ E+ L R
Sbjct: 1158 GGKHPHKAYCEKHSMEQKAKAESQKHGAEELKS-LKHYRVGVLSEVELER 1206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,743
Number of Sequences: 28952
Number of extensions: 253604
Number of successful extensions: 643
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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