Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P23
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)         106   1e-23
SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 28   4.5  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   27   7.8  
SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       27   7.8  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score =  106 bits (254), Expect = 1e-23
 Identities = 55/113 (48%), Positives = 70/113 (61%)
 Frame = +2

Query: 95  GKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRN 274
           G +K+PD +DLVKT +FKELAPYDPDW+Y+R                        GRK  
Sbjct: 3   GNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKNR 39

Query: 275 GVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILTTQGRRDLDRIAAQV 433
           G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRIA+Q+
Sbjct: 40  GSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRIASQI 92


>SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 314 IARKALQALEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLK 442
           IA   LQ   A+  V ++     +++T GRR+LDR  A++  K
Sbjct: 80  IAPNGLQYCVAMMAVSRIGACAVLMSTSGRRELDRFTAELLRK 122


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 170 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEAL 349
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 350 KL 355
           +L
Sbjct: 117 QL 118


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 187  AYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDD 59
            AY+    ++G +++ET  LY   +IW+L  +   Q+S  SFD+
Sbjct: 1580 AYVPLCGIMGGKYMET-VLYNHDLIWSLCCSHDVQLSHPSFDE 1621


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 32  TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 208
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 209 IYIRSPVGVKTVTKIFG 259
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 2   HEAQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKE 151
           HE +GK+  +++K  E +K+V  V     K+ ++ +      V  A  KE
Sbjct: 381 HEVKGKVSEISIKTDETNKVVHEVKG---KVSEISIKTEKMAVDLASLKE 427


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = +2

Query: 182 VRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVE 361
           VR   ++    +   + V + T++  GRK++  T +H C   G++  K  + +  +    
Sbjct: 222 VRRITVMSRTCLVRRITVMSRTRV--GRKKDHGTVTHTCEDHGNVTHKCRKGITVMSRTR 279

Query: 362 KVQDGGRILTTQGRRDLDRIAAQVRLK 442
            V+   RI      R L RI    R +
Sbjct: 280 LVR---RITVMSRTRVLRRITVMSRTR 303


>SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
 Frame = +2

Query: 56  KIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGV 235
           K++ TV      +GK  VP  + + +  R +    Y   W    C  IL + Y+ +  GV
Sbjct: 457 KLIDTVDLEGGPVGKPVVPAAL-MNRPTRGERRFAY---WALAEC--ILAY-YVGTDEGV 509

Query: 236 KT-VTKIFGGRKRNGVTP-SHFCRSSGSIARKALQALEALKLVEKVQDGGRILTTQGRRD 409
           K  +  +    K +G+   +      G ++R+   A EAL  ++KV       + + R+D
Sbjct: 510 KADIQNLLEQSKESGIKGLADMDTRVGKLSRRMQDAEEALASLDKVTRTDGENSAKARQD 569

Query: 410 LDR--IAAQVRLKAKQQAKQPV 469
           + R  +  + RL+      +P+
Sbjct: 570 ISRWQVETEDRLREVDSKMRPL 591


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 380 GRHLEPSLPTSTLQELGELYEQY 312
           G  LEP +P +T  EL EL+E Y
Sbjct: 39  GVELEPLVPRTTAIELRELFESY 61


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 283  CDTIAFATTKNFSDSLNSNRRADIDVTQYSSTAY 182
            CDT+ + TT+  +   ++ R    D  +YS+T Y
Sbjct: 945  CDTVRYRTTQYDTLRHSTTRTEQCDTVRYSTTRY 978


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,654,739
Number of Sequences: 59808
Number of extensions: 276954
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)