Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2HVM4 Cluster: Transferase; n=3; Medicago truncatula|R...    33   2.2  
UniRef50_UPI000038E124 Cluster: hypothetical protein Faci_030009...    32   3.8  

>UniRef50_Q2HVM4 Cluster: Transferase; n=3; Medicago truncatula|Rep:
           Transferase - Medicago truncatula (Barrel medic)
          Length = 465

 Score = 33.1 bits (72), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 365 LCKPARMFSHSYKVYISFIKILYFTKVVSQTNVLTSKITKT*IHLRP 225
           LC   ++ +H Y++Y+   K    + ++S TN+L + ++KT  H  P
Sbjct: 27  LCDQLKLPNHGYQLYLFTNKNHSSSSLISSTNILITSLSKTLTHYYP 73


>UniRef50_UPI000038E124 Cluster: hypothetical protein Faci_03000989;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03000989 - Ferroplasma acidarmanus fer1
          Length = 176

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = +2

Query: 74  ISVAAAARVILNILIDLVLGIIFCFEFNFILKLRMV---RIFHCI-Y*SDQVLVSVADVS 241
           +++A    ++  ++I ++LGIIF +  N I    M+    IF  I +    VL+   D+S
Sbjct: 65  LTLAPVEGIVGGLIIGIILGIIFAYTHNKIPGKNMIIKGEIFGLILWIIFDVLIGAVDIS 124

Query: 242 TFS*FY*LVHL-FVILPL 292
           T+   Y +  + F I+PL
Sbjct: 125 TYGLTYYIASIAFDIIPL 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,604,315
Number of Sequences: 1657284
Number of extensions: 5180255
Number of successful extensions: 9974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9972
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)