Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   2.6  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   4.5  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 383 GHTAS*LCKPARMFSHSYKVYISFI 309
           GHT+  LCKP    +H  +V++ ++
Sbjct: 238 GHTSLVLCKPLTGRTHQLRVHLQYL 262


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 223 DQDLVTLINTVKYTNHT*LQNKVELETKN 137
           DQ+L+ LIN  K+ N     NK  +ET+N
Sbjct: 624 DQELLNLINDEKWQNFV---NKTLVETRN 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,623
Number of Sequences: 5004
Number of extensions: 23830
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)