Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0282 - 6795269-6795564,6795682-6795761,6795873-6795926,679...    27   4.3  
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026...    27   4.3  
02_03_0251 + 16849905-16851308                                         27   4.3  
02_03_0249 + 16826157-16827578,16827775-16827777                       27   4.3  
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    27   7.5  

>09_02_0282 -
           6795269-6795564,6795682-6795761,6795873-6795926,
           6796003-6796081,6796893-6796952,6798152-6798161
          Length = 192

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 116 IDLVLGIIFCFEFNFILKLRM 178
           + LVL +IFCFE + ILK+ +
Sbjct: 11  VGLVLDLIFCFESDHILKVSL 31


>05_06_0185 -
           26201013-26201429,26201537-26201695,26201774-26202601,
           26203483-26203605
          Length = 508

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 296 FTKVVSQTNVLTSKITKT*IHLRPRPRPGHSN 201
           FT +VSQ  +    I++   HLR  PR  H N
Sbjct: 367 FTLIVSQIRMEHDVISENSSHLRQMPRSSHGN 398


>02_03_0251 + 16849905-16851308
          Length = 467

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 230 RPRPRPGHSNKYSEIYEP 177
           R RP PG +N+Y  +Y+P
Sbjct: 89  RVRPTPGETNRYELLYQP 106


>02_03_0249 + 16826157-16827578,16827775-16827777
          Length = 474

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 230 RPRPRPGHSNKYSEIYEP 177
           R RP PG +N+Y  +Y+P
Sbjct: 91  RVRPTPGETNRYELLYQP 108


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 400 TLSSSWGIQLANFVNLHVCSLIHIKYIFLS 311
           T  S    Q+AN +   +CSL ++KY+ LS
Sbjct: 239 TSLSFHNFQIANLIPASICSLKNLKYLDLS 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,386,515
Number of Sequences: 37544
Number of extensions: 129730
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)