Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           29   1.9  
SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)                27   5.8  

>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 74  ISVAAAARVILNILIDLVLGIIFCFEFNFILKLRMVRIF 190
           I      RVI+N  + +++G++ CF    I K+R   +F
Sbjct: 140 IEALVITRVIINQTLFVLVGMVLCFAVRKITKIRTSNLF 178


>SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)
          Length = 911

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 290 KVVSQTNV--LTSKITKT*IHLRPRPRPGHSN 201
           K+VS+  V  + S +TK+ +++ P PR  HSN
Sbjct: 528 KLVSEVGVGVIASGVTKSNVYVVPGPRGAHSN 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,984,229
Number of Sequences: 59808
Number of extensions: 168511
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)