Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    27   3.9  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    27   3.9  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical p...    27   6.8  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 116 IDLVLGIIFCFEFNFILKLRMVRIFHCIY*SDQV 217
           I+ ++ I F  ++NF+  +++   FH IY  D+V
Sbjct: 112 INRLVAIYFPLKYNFLFGIKLTLAFHFIYYLDRV 145


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 104 LNILIDLVLGI-IFCFEFNFILKLRMVRIF 190
           +N LI L++G  + CF  NF++ +R  R F
Sbjct: 192 INYLIHLMIGFDLICFPINFLIMIRYRRKF 221


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 321 IYFI*MREHTCRFTKLASCMPHEDER 398
           IY I MR+H     KLAS  PH D++
Sbjct: 312 IYTIWMRQHNVIADKLASVNPHWDDQ 337


>U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical
           protein K06B9.4 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 365 LCKPARMFSHSY-KVYISFIKILYFTK 288
           LC  +RMFSH+Y   + + I+ +YF K
Sbjct: 206 LCDLSRMFSHAYHSSHRNSIRFIYFNK 232


>Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical
           protein F11A5.13 protein.
          Length = 165

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 74  ISVAAAARVILNILIDLVLGIIFCFEFNFILKLRMVRIFHCIY*SDQVLVSVADVSTF 247
           I +  A  ++LN   DL   +   F+F F L L ++ ++ CI+    V V +A +  +
Sbjct: 91  ICLVTAKLIVLNAKGDLP-NVPEIFKFGFALSLVIISVYICIFTKCLVKVCLARIKMY 147


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 235 CIYVFVILLVSTFVC---DTTFVKYK 303
           C ++FVIL V +FVC    + F KYK
Sbjct: 565 CGFIFVILAVMSFVCYRSKSVFDKYK 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,436,393
Number of Sequences: 27780
Number of extensions: 129806
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)