Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P22
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    29   0.89 
At5g24000.1 68418.m02820 expressed protein contains Pfam profile...    28   2.7  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    27   4.8  

>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 171 NFRIKLNSKQKIIPKTKSIRIFSITRAAAATEIMR 67
           NF   +N   KI+PKT+   +FS T+ +   ++ R
Sbjct: 252 NFEEDMNKILKILPKTRQTALFSATQTSKVKDLAR 286


>At5g24000.1 68418.m02820 expressed protein contains Pfam profile
           PF05684: Protein of unknown function (DUF819)
          Length = 443

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 74  ISVAAAARVILNILIDLVLGIIFCFEFNFIL 166
           I + AA +V++++ + LVLG +FC +   +L
Sbjct: 358 IFLFAAIQVMVHLAVTLVLGKLFCIDMKLLL 388


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 174 RNFRIKLNSKQKIIPKTKSIRIFSITRAAAATEIMR 67
           +NF   L     ++PKT+   +FS T++A   ++ R
Sbjct: 316 QNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLAR 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,827,152
Number of Sequences: 28952
Number of extensions: 112214
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)