Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P21
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   1.8  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   4.2  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    24   7.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   7.3  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    24   9.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    24   9.7  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    24   9.7  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 364 KPTTKPRNSQSRAPRGPMQPPV*VSPRTCALDTEF 260
           KP+  PR S S  P  P+ PP  V     A++ EF
Sbjct: 257 KPSESPRRSVSSTP--PVHPPPPVPQNLSAVNEEF 289


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 373 SEAKPTTKPRNSQSRAPRGPMQPP 302
           +E  P   P+    + PRGP  PP
Sbjct: 207 AEQDPMEPPKFRHKKVPRGPPSPP 230


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 KTAINAILWHPSLQDSYSL 156
           K+A NAI   P L DSYSL
Sbjct: 248 KSAGNAIWLDPKLTDSYSL 266


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 186 SVYPNNLPNAAHVC 227
           SVYPN LP  A++C
Sbjct: 103 SVYPNLLPLTANIC 116


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 367 AKPTTK-PRNSQSRAPRGPMQPPV 299
           ++PTT  P NS S  P  P Q P+
Sbjct: 23  SQPTTSAPSNSASSTPYSPQQVPL 46


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 228 GVMGTLSLIMVNSVSNAQVRGETYT 302
           G +  +SLI    ++N   + ETYT
Sbjct: 176 GPVAVMSLITAKVIANVMAKDETYT 200


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 385 QDAMSEAKPTTKPRNSQSRAPRGPMQPPV 299
           Q+A + + P+ K  NS+  +  GP++PPV
Sbjct: 147 QEAAAYSAPSPKSLNSKKDS--GPLRPPV 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,514
Number of Sequences: 5004
Number of extensions: 34449
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)