Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P21
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0594 - 15922956-15923483 29 1.3
01_05_0534 + 22999876-23000333,23000835-23000949 29 1.8
04_03_0509 - 16653153-16653318,16653518-16653650,16653720-166538... 27 4.1
04_03_0218 + 12780061-12780150,12780864-12781394 27 4.1
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 27 7.1
12_02_0304 + 17112677-17113195 26 9.4
10_07_0082 - 12743179-12743283,12743380-12743561,12743910-12743967 26 9.4
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243... 26 9.4
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 26 9.4
01_03_0002 - 11506135-11506783,11506815-11506912 26 9.4
>05_03_0594 - 15922956-15923483
Length = 175
Score = 29.1 bits (62), Expect = 1.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 293 DLHWWLHGPSRC 328
D+ WW HGP RC
Sbjct: 42 DVDWWFHGPRRC 53
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 346 RNSQSR-APRGPMQPPV*VSPRTCALDTEFTIISERVPITP 227
R+S++ APR P PP+ P+T L T T+ P+ P
Sbjct: 38 RSSKAEGAPRRPAAPPLSPPPKTPTLSTPPTLSQPPTPVKP 78
>04_03_0509 -
16653153-16653318,16653518-16653650,16653720-16653882,
16654488-16654595,16654986-16655100,16655581-16656083
Length = 395
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 133 SLQDSYSLQAGGSLLMQPQSTRTTCPML 216
SL+D+ + GGS + P++ R CP L
Sbjct: 42 SLEDARGAEGGGSGFVDPRAIRFECPRL 69
>04_03_0218 + 12780061-12780150,12780864-12781394
Length = 206
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 278 TGAWRDLHWWLHGPSRCSTLAVPW 349
TGA R + WL GP C A PW
Sbjct: 6 TGA-RGISHWLEGPRACRRKAEPW 28
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 285 RGETY-TGGCMGPRGARLWLFLGFV 356
+G Y TGGC GP R W+ G++
Sbjct: 314 QGNPYLTGGCQGPGLQRKWIGAGWI 338
>12_02_0304 + 17112677-17113195
Length = 172
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 364 KPTTKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIISERVP 236
+P T PR + RAP P + P SP A T +I+ P
Sbjct: 26 QPQTPPRRNPPRAPPSPRRAP---SPSVTAEPTPAPVIAPSPP 65
>10_07_0082 - 12743179-12743283,12743380-12743561,12743910-12743967
Length = 114
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 183 ASVYPNNLPNAAHVCGVMGTLSLIMVNSVSNAQVRGETYT--GGCMGPRGARLWLFLGFV 356
A + ++ P H+ G+L + + VR E GG G G +WL G +
Sbjct: 2 AQLLSSSAPPRLHLAATPGSLVSMRRQKARSLTVRCEQGAKGGGGGGGGGLDVWLSRGAM 61
Query: 357 VGFASLI 377
+GF + I
Sbjct: 62 LGFVAAI 68
>07_03_0832 -
21823518-21823826,21823920-21824070,21824148-21824385,
21824469-21824679,21824789-21825009,21825590-21825697,
21825813-21826142,21826740-21827050,21828969-21829651
Length = 853
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 103 TAINAILWHPSLQDSYSLQAGGSLL 177
T I +LW L D Y Q+GG L
Sbjct: 408 TTIGCLLWGSDLIDMYQFQSGGYTL 432
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 185 GCINNEPPACKE*ESCKDGCHNIAFIAVFKP 93
GCI+ PP KE + G HN+ AV P
Sbjct: 776 GCIDLNPPDEKELDELLRGPHNLRASAVTSP 806
>01_03_0002 - 11506135-11506783,11506815-11506912
Length = 248
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 228 GVMGTLSL-IMVNSVSNAQVRGETYTGGCMGP--RGARLWLFLGFVVGFAS 371
G+ G + I N+ SN ++ + +GGC+G R A WL + V AS
Sbjct: 91 GIHGIAEIAIESNNQSNEEIGLDFLSGGCLGDERRAAEAWLGVVIVQVLAS 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,311
Number of Sequences: 37544
Number of extensions: 239296
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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