Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P21
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)              27   5.4  
SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        27   7.2  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               26   9.5  
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 92  HTARHIHILETIHFMRAINLYFY 24
           HT R +H+L   H  RA+N+  Y
Sbjct: 81  HTKRALHVLHYTHTKRALNVLHY 103


>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
          Length = 641

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +1

Query: 88  VCGLKTAINAILWHPSLQDSYSLQAGGSLLMQPQSTRTTCPMLPMFVV*W 237
           +CG+K  +   +W P + +   ++    +    QS R+  P  P+  + W
Sbjct: 523 MCGMKAIVRTCVWWPKMDE--QIEEACRVCSVCQSVRSAPPSAPLIPLKW 570


>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 283 TCALDTEFTIISERVPITPQTWAALGKLFG*TEAASIMNHQPAKNKNPAKMDA 125
           +C+      I+ +RVP+          L+    +A   N    K K PAK D+
Sbjct: 447 SCSAWQRMQILMDRVPLVNILLVQFANLYRTASSAMASNQTTPKPKTPAKADS 499


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +2

Query: 206 AQCC-PCLWCNGDSFTYN 256
           A+CC  C WC+  SF YN
Sbjct: 400 AKCCWSCEWCSLGSFVYN 417


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 364 KPTTKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIISERVPITPQTWAALG 206
           +P +KP ++    P+ P QP   + P+      E  +    VP     W A G
Sbjct: 200 EPVSKPNSASGPRPQEPQQPKKLIRPQGSQKSVEEPMPVISVPEKIIKWTATG 252


>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 277 ALDTEFTIISERVPITPQTWA 215
           AL T   II   VP+TP TWA
Sbjct: 593 ALTTTVGIIEIYVPMTPNTWA 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,974
Number of Sequences: 59808
Number of extensions: 292835
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)