Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P21
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024865-1|AAF60878.1|  157|Caenorhabditis elegans Hypothetical ...    79   8e-16
AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical ...    31   0.39 
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    29   0.90 
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    29   0.90 
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    29   0.90 
Z46242-12|CAA86332.1|  690|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p...    29   1.6  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    29   1.6  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF256467-1|AAF71546.1|  690|Caenorhabditis elegans SEL-5B serine...    29   1.6  
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine...    29   1.6  
Z68298-5|CAA92602.1|  290|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>AC024865-1|AAF60878.1|  157|Caenorhabditis elegans Hypothetical
           protein Y74C10AL.2 protein.
          Length = 157

 Score = 79.4 bits (187), Expect = 8e-16
 Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +3

Query: 60  CFENMNMPSCVWFENGDKRNIVASIXXXXXXXXXXXXXXDAASVY-PNNLPNAAHVCGVM 236
           CF+ +   +C  F+   +RN VAS+              D A+V    N  N   +  V 
Sbjct: 4   CFDQIRC-NCS-FDLEGRRNAVASVVSAALFFIGWWLMIDTAAVTNKENWTNVYFIITVA 61

Query: 237 GTLSLIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIASCWI 392
            T+++ MVN++SN+QVRGE+   G +G +G+RLWL   FVV FASL+A+ WI
Sbjct: 62  STVAMFMVNAISNSQVRGESLHEGLLGTKGSRLWLMAAFVVSFASLVAATWI 113


>AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical
           protein F38G1.3 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 338 PESSTARAHATTSVSLSTHLCIRH*IHHYK*KSPHY 231
           P +ST+    TT ++ S H    H  HH+K  S HY
Sbjct: 120 PTTSTSTTTTTTQITPSMHRKKHHHHHHHKENSSHY 155


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 367 AKPTTKPRNSQSRAPRGPMQPPV*VS-PRTCALDTEFTIIS 248
           AKP  KP    + AP+ P  PP   S PR  A     TI S
Sbjct: 55  AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINS 95


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 312 MGPRGARLWLFLGFVVGFASLIASCWI 392
           M  RGA++WL   FV+G AS I +C++
Sbjct: 81  MFQRGAQIWL--NFVIGVASSIVTCFV 105


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 367 AKPTTKPRNSQSRAPRGPMQPPV*VS-PRTCALDTEFTIIS 248
           AKP  KP    + AP+ P  PP   S PR  A     TI S
Sbjct: 55  AKPAPKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINS 95


>Z46242-12|CAA86332.1|  690|Caenorhabditis elegans Hypothetical
           protein F35G12.3b protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 TKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIIS 248
           + PRN +  +PR P  PP+  S +  +L  +   IS
Sbjct: 351 SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSIS 386


>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
           protein F35G12.3a protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 TKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIIS 248
           + PRN +  +PR P  PP+  S +  +L  +   IS
Sbjct: 351 SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSIS 386


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 379 AMSEAKPTTKPRNSQSRA-PRGPMQPPV*VSPRTCA 275
           A + A P T+P  S+S A PR     P    P+TCA
Sbjct: 44  AATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCA 79


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 379 AMSEAKPTTKPRNSQSRA-PRGPMQPPV*VSPRTCA 275
           A + A P T+P  S+S A PR     P    P+TCA
Sbjct: 173 AATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCA 208


>AF256467-1|AAF71546.1|  690|Caenorhabditis elegans SEL-5B
           serine/threonine kinase protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 TKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIIS 248
           + PRN +  +PR P  PP+  S +  +L  +   IS
Sbjct: 351 SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSIS 386


>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
           serine/threonine kinase protein.
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 TKPRNSQSRAPRGPMQPPV*VSPRTCALDTEFTIIS 248
           + PRN +  +PR P  PP+  S +  +L  +   IS
Sbjct: 351 SNPRNKRDSSPRNPEAPPIQSSSKMASLSQQVPSIS 386


>Z68298-5|CAA92602.1|  290|Caenorhabditis elegans Hypothetical
           protein F44D12.6 protein.
          Length = 290

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 382 DAMSEAKPTTKPRNSQSRAPRGPMQP 305
           D   + KP   PR S+ R P GPM P
Sbjct: 207 DKKPDRKPQETPRRSKQRTP-GPMMP 231


>Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical
           protein T11B7.1 protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 178 SIMNHQPAKNKNPAKMDATILRLSPFSNHTQL 83
           SI NH+ +KN NP  +D    +L  F     +
Sbjct: 154 SIQNHENSKNVNPLTLDELTEQLKQFKEELSI 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,786,423
Number of Sequences: 27780
Number of extensions: 204411
Number of successful extensions: 507
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)