Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P21
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   0.95 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   2.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   3.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.7  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +3

Query: 84  SCVWFENGDKRNIVASIXXXXXXXXXXXXXXDAASVYPNNLPNAAH 221
           +C + +N DKRN+  +               +   +  N LPN  H
Sbjct: 115 ACGFIDNIDKRNLSVTSMIQKRALGPSFSTGERCRISSNFLPNKMH 160


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 339 LFLGFVVGFASLIASCWI 392
           LF G  +G+A+ + SCW+
Sbjct: 58  LFKG--IGYAAAVMSCWM 73


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = -3

Query: 123 QYCVYRRFQTTHS*AYSYSRNNSFYACYKSLFLQM 19
           +Y  Y  +   ++  Y+ + NN++   YK+  + +
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = -3

Query: 123 QYCVYRRFQTTHS*AYSYSRNNSFYACYKSLFLQM 19
           +Y  Y  +   ++  Y+ + NN++   YK+  + +
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 357 VGFASLIASCW 389
           +G+A+ + SCW
Sbjct: 100 IGYATCVLSCW 110


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 357 VGFASLIASCW 389
           +G+A+ + SCW
Sbjct: 153 IGYATCVLSCW 163


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 100 SNHTQLGIFIFSKQFI 53
           S HT LG+   +K+FI
Sbjct: 82  SRHTTLGLLTKAKRFI 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,151
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)