Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P20
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 221 3e-59
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 221 3e-59
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.25
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.78
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 1.8
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 2.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 3.1
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 4.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 5.5
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 5.5
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 24 9.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 221 bits (540), Expect = 3e-59
Identities = 98/120 (81%), Positives = 108/120 (90%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 221 bits (540), Expect = 3e-59
Identities = 98/120 (81%), Positives = 108/120 (90%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.25
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 230 G 232
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.78
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GRFVENTMGRRPARCYRYCKNKPYPK 85
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 2.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 274
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 272 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 376
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 196
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 135 WAKRERQWMTSH 170
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 373 HPSLEPISSSARQHFIDADDMEGV*SHPDVELIFTA 266
HP P + A++ FI+ + V S P+ I+ A
Sbjct: 35 HPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDA 70
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 200 EQLSSEALEAGRICCN 247
E LSS+ + RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,849
Number of Sequences: 5004
Number of extensions: 34661
Number of successful extensions: 126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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