Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P20
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   226   4e-60
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   2.0  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   2.0  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   3.5  
AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  226 bits (553), Expect = 4e-60
 Identities = 100/120 (83%), Positives = 107/120 (89%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 216 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 311
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 89  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 235
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 154 CRSLFAQVENTDLWVRHT--PTKPRFRIRFILTISITSRWSAPHCVL--HKATL 5
           C    A + NTD  +  T  P +PRFR   ++T   T  +   HC +  H AT+
Sbjct: 234 CEQNSATLPNTDQQLSPTLSPNEPRFRN--LITSEPTPSFECKHCTIKFHDATM 285


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -3

Query: 236 YGLLPAPQNSA--ARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPDKTEI*DTVYSY 63
           Y L P PQ S     +H     +   S  LS  +CPSR   +     P       TV++Y
Sbjct: 233 YSLYPPPQPSQQFVHSHNFHQPKFDASSMLSTGYCPSRNVATFKVDKPY-----GTVFTY 287

Query: 62  NIDN 51
           +  N
Sbjct: 288 DHQN 291


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 314 HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQN 210
           HG G      GT   R  +  +CCN +G L  P N
Sbjct: 183 HGIGAFGGNKGTGYGR--VPSSCCNEHGKLSYPNN 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,286
Number of Sequences: 27780
Number of extensions: 201476
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)