Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P20
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 216 5e-57
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 216 5e-57
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 215 7e-57
At1g53180.1 68414.m06027 expressed protein 31 0.36
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 1.1
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 1.1
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 1.1
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 1.4
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 1.9
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 1.9
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 1.9
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 2.5
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 3.3
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 4.4
At3g15115.1 68416.m01912 expressed protein 27 4.4
At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase, puta... 27 5.8
At2g41400.1 68415.m05109 expressed protein 27 5.8
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 5.8
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 26 7.6
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 26 7.6
At4g16320.1 68417.m02474 expressed protein ; expression supporte... 26 7.6
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 26 7.6
At3g27670.1 68416.m03455 expressed protein 26 7.6
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 26 7.6
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 216 bits (527), Expect = 5e-57
Identities = 95/120 (79%), Positives = 106/120 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 216 bits (527), Expect = 5e-57
Identities = 95/120 (79%), Positives = 106/120 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 215 bits (526), Expect = 7e-57
Identities = 95/120 (79%), Positives = 106/120 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.7 bits (66), Expect = 0.36
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 14 FVENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 142
F EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 20 FFENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 302 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 159
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 302 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 159
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 302 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 159
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 343
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 209 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 331
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 188 SDEYEQLSSEALEAGRICCNKYLV 259
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 152 SLSFCPSRKYGSLGQAH 102
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 376 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 236
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 236 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 325
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 140 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 313
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 242 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 337
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 14 FVENTMGRRPARCYRYCKNKPYP 82
F +N + RR +R RYC + PYP
Sbjct: 26 FFDNLLDRR-SRILRYCHSDPYP 47
>At4g12430.1 68417.m01967 trehalose-6-phosphate phosphatase,
putative similar to trehalose-6-phosphate phosphatase
(AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
Pfam profile PF02358: Trehalose-phosphatase
Length = 368
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 371 SQSGAYQLQRTTTFY*CG*HGRGVVSSGCGTDLYRSS 261
S+ YQL T Y G HG +++S G + ++S+
Sbjct: 151 SRDKVYQLVGLTELYYAGSHGMDIMTSSDGPNCFKST 187
>At2g41400.1 68415.m05109 expressed protein
Length = 150
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 74 VYSYNIDNISLVGAPLCSPQSDP 6
++SY ID +S+ G CS DP
Sbjct: 26 LWSYTIDRVSIRGVVYCSLDGDP 48
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 VPDPKIRIFDLGKKRATVDDFPL 172
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 280 LIFTAVLYEVLVATDTACFQRLRTQLLVLIRH*VH 176
LI T + VLV T ACF+ LR L+ VH
Sbjct: 321 LIDTLLEERVLVGTGRACFESLRPLAYSLLAEIVH 355
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIR 292
S E G CC Y ++C D H R
Sbjct: 911 SRERCHHGSNCCRSYAKESCSHDHHHTR 938
>At4g16320.1 68417.m02474 expressed protein ; expression supported
by MPSS
Length = 279
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 384 NAPRIPVWSLSAPAHDNILLMRMTWKGCS 298
++ RIPV + S P+H N L+ ++ CS
Sbjct: 45 DSARIPVDNYSQPSHSNELVSHSKFRECS 73
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 143 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 250
K A DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 340 RQHFIDADDMEGV*SHPDVELIFTAVLYEV 251
RQ IDA ++ V SHP +IF +L +
Sbjct: 1704 RQWLIDAVEISCVSSHPSTAIIFVGLLSSI 1733
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 200 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 325
E +S + A C NK+ K C + I+ HPFH +R+
Sbjct: 130 ESKTSRSYYACLECGNKFH-KQCVESPLEIKHPSHPFHSLRL 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,356,659
Number of Sequences: 28952
Number of extensions: 191563
Number of successful extensions: 567
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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