Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P19
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 297 7e-82
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 292 3e-80
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 159 3e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 114 9e-27
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.34
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 28 1.0
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 1.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 3.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.2
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 5.5
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 7.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 9.6
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 9.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 297 bits (729), Expect = 7e-82
Identities = 131/179 (73%), Positives = 156/179 (87%)
Frame = +3
Query: 9 AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 188
A+NNYARGHYT+GKE++D VL+RIR++AD C+GLQGFL+FH LL+ERL+
Sbjct: 103 ASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLN 162
Query: 189 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 368
++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLD
Sbjct: 163 MEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLD 222
Query: 369 IERPTYTNLNRLIGQIVSSITDSLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 545
IERPTY NLNRLI Q+VSSIT SLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++S
Sbjct: 223 IERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 292 bits (716), Expect = 3e-80
Identities = 129/179 (72%), Positives = 155/179 (86%)
Frame = +3
Query: 9 AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 188
A+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH LL+ERL+
Sbjct: 99 ASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLA 158
Query: 189 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 368
++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLD
Sbjct: 159 MEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLD 218
Query: 369 IERPTYTNLNRLIGQIVSSITDSLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 545
IERP+Y NLNRLI Q+VSSIT SLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++S
Sbjct: 219 IERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 159 bits (385), Expect = 3e-40
Identities = 72/177 (40%), Positives = 108/177 (61%)
Frame = +3
Query: 9 AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 188
A N +A+GHYT G E+ D VLD +R+ A+ C LQGF + H LL+ ++
Sbjct: 97 AGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIR 156
Query: 189 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 368
+Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L
Sbjct: 157 EEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLK 216
Query: 369 IERPTYTNLNRLIGQIVSSITDSLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 539
I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 114 bits (274), Expect = 9e-27
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
Frame = +3
Query: 9 AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLS 188
A NN+A G Y+ + I + ++D I + AD L+GF + H L+ERL+
Sbjct: 100 AGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLN 158
Query: 189 VDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 365
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 159 DRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRL 218
Query: 366 DIERPTYTNLNRLIGQIVSSITDSLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAP 536
+ PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P
Sbjct: 219 HTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 310 IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 423
++ S+ T KP + TW +N R P S+ + H
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 276 ILTTHTTLEHSDCAFMVDNEAI-YDICRRNLDIERPTYTNLNRLIGQIVSSITDSLRFDG 452
I+TT+T EH NE I DI ++ + + RPTY N + + D LR +
Sbjct: 39 IVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLCRPTYENAKLVATHVRQFQRDMLRIES 98
Query: 453 ALNV 464
+ V
Sbjct: 99 TVIV 102
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -1
Query: 84 CGCGRGPSLRFPFQWCS---DHEH-SCLRPSC 1
C CG+ +LRFP CS + H SCL P C
Sbjct: 43 CYCGKDRNLRFPDLQCSVCLNMFHLSCLSPPC 74
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 281 KDRVVGLYNSSGHLGCGIDSELQFRLLAVVNGESLHEERSETRTGATTERVEDEESL-EA 105
KD++ L N + HLG + S Q + E + + +++ RV++E + E
Sbjct: 146 KDQIEALQNENSHLGEQVQSAHQAL-------SDIEERKKQHMFASSSSRVKEEILVQEK 198
Query: 104 CALVSEFADAVED 66
ALVS+ A D
Sbjct: 199 SALVSDLASLQSD 211
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 367 ILNARPTPTSIVLSARSYHRL 429
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 464 DIEGAVETQRVGNR*YDLADKTIEVGVGRAFN 369
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 378 PTYTNLNRLIGQIVSSITDSLRFDGALNVDLTEFQTNLVPYP 503
PT T ++ + ++ +D G + + F++NLVPYP
Sbjct: 493 PTETAVSIVHVPLMFPCSDQTSSRGRAPIAILSFKSNLVPYP 534
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 80 DAVEDQVYDFLSNGVVT-TSIVVC 12
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 3 TRAANNYARGHYTIGKEIVDLVL 71
+R+ NN GH T+G + V L L
Sbjct: 887 SRSVNNQRNGHLTVGSDAVCLSL 909
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 414 IVSSITDSLRFDGALNVDLT 473
IVSSI D+ FD L VDLT
Sbjct: 442 IVSSIFDNANFDRNLIVDLT 461
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 6 RAANNYARGHYTIGKEIVDLV 68
R ANN+ RGH I K+ D +
Sbjct: 601 RKANNFFRGHIEIDKKTKDFL 621
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 218 VRYLSRTPGVHCCCRALQLYPYN 286
V ++S+ P H C L + PYN
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYN 649
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 179 LHEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLS-NGVV 33
LH + + + ++ ED+ +C ++S AD + + L+ NG++
Sbjct: 1078 LHSQPIQNVSDVNNKKDEDDHEQTSCLIISGIADVFSENMSLLLNVNGIL 1127
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 453 ALNVDLTEFQTNLVPYPRIHFPLVT 527
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 200 AVVNGESLHEERSETRTGATTERVEDEESLE 108
AVVNG S H + + + + ESLE
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,753
Number of Sequences: 5004
Number of extensions: 48350
Number of successful extensions: 172
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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