Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P18
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   1.8  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.4  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   5.6  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   9.8  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   9.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.8  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 405 LVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILI 524
           L+PA + +V  K+NA R  A   ++A    TTP A K ++
Sbjct: 96  LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKAIV 135


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 180 IVQGFGNVGLHTCRYLVRAGATCIGIIEHD 269
           +V G G +G    +YLV AG   +GI++ D
Sbjct: 47  LVIGAGGLGCPAMQYLVAAGIGTLGIMDGD 76


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 350 ESYDSPI--LDSIVLKSLGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDE 177
           ES+ SP+  LD  ++     N    +DG    + T  S S       G +TH  E+ N  
Sbjct: 82  ESFSSPLKKLDGTMINFKEKNIQHDLDGVENDFATVQSASNGVHAINGKRTHPDESENPR 141

Query: 176 RLP 168
           +LP
Sbjct: 142 KLP 144


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 38  GKPITKVVSMEEFLLLAEVCPRLGKLYQRGQLHEH 142
           G+P T   SME     A   P L  L +RG L EH
Sbjct: 43  GRPRTLSTSMEASA--APTIPELKNLRRRGSLDEH 75


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 71  EFLLLAEVCPRLGKLYQ-RGQLHEHDWYYSR 160
           +F L+A+   RLG  YQ RG L +   YY R
Sbjct: 334 DFKLIAKALGRLGTTYQKRGDLVKAIDYYQR 364


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 43  TDYQGGIHGRVSATGRGVSTAWKTLSTRPIT*A*LVLLPVGAGRRSSFKVSVTWVCTPAG 222
           T Y  G+     ++  G STA  T ST  +    +V     A   S+     T+V TP  
Sbjct: 61  TSYSTGLASVTESSDDGASTALPTTSTESV----VVTTSAPAASSSATSYPATFVSTPLY 116

Query: 223 T 225
           T
Sbjct: 117 T 117


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 HVLTLVGLRTGESYDSPILDSIVLKSLGVNTIMVV 279
           +VL + G   G SY  PIL  ++LK   V +I  +
Sbjct: 416 YVLLIAG-GVGFSYTLPILRDLILKECNVTSITFI 449


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 79  QKLFHGYHLGNRFARYASVCVDIFLV 2
           QK+FH +H  + F  Y + C+   L+
Sbjct: 308 QKIFHIWHALSYFEEYTASCISDMLL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,884
Number of Sequences: 5004
Number of extensions: 52156
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)