Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P18
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            169   2e-42
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               62   2e-10
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               62   2e-10
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_8406| Best HMM Match : UCR_UQCRX_QCR9 (HMM E-Value=3)               29   2.5  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   29   3.3  
SB_19270| Best HMM Match : Ribosomal_L38e (HMM E-Value=4.2)            29   3.3  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              27   7.7  
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)                27   7.7  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  169 bits (410), Expect = 2e-42
 Identities = 85/134 (63%), Positives = 101/134 (75%), Gaps = 12/134 (8%)
 Frame = +3

Query: 186 QGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGFPGAKP 365
           +GFGNVGLH+CRYL RAGA CIG+IE DGS++N DGIDPK LEDY++E GT+  +PGAK 
Sbjct: 258 RGFGNVGLHSCRYLHRAGAKCIGVIERDGSLWNPDGIDPKELEDYKLEKGTITNYPGAKM 317

Query: 366 YEGENMLYEKCDILVPAAVEQVIHKENAHRIQ------------AKIIAEAANGPTTPAA 509
            E EN+L  +CDIL+PAA E+ I K+NAHRI+            AKIIAE ANGPTTP A
Sbjct: 318 VE-ENLLEAECDILIPAANEKQITKKNAHRIKAKEKGTITNYPGAKIIAEGANGPTTPEA 376

Query: 510 DKILIDRKILVIPD 551
           D+ILI  K LVIPD
Sbjct: 377 DQILIANKQLVIPD 390



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 37  GQTDYQGGIHGRVSATGRG 93
           G+  + GGIHGRVSATGRG
Sbjct: 241 GKPIHLGGIHGRVSATGRG 259



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +2

Query: 11  DINAHACVTGKPI 49
           ++NA+ACVTGKPI
Sbjct: 232 NMNAYACVTGKPI 244


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDY----RIENG 335
           GK   V G GNV       + + G   + + +  G++Y+ DGI  + L        ++ G
Sbjct: 231 GKNVTVSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKLAFITNLKNVKRG 290

Query: 336 TVVGFP---GAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRIQAK---IIAEAANGPT 497
            +  +    G + +EG+   + KCD+ +P A +  ++KE+A  + A     +AE AN P+
Sbjct: 291 RISEYATKYGVEFHEGKRPWFLKCDVALPCATQNEVNKEDAEMLVANGCFCVAEGANMPS 350

Query: 498 TPAADKILIDRKILVIP 548
            P+A ++    KIL  P
Sbjct: 351 EPSAIEVFQKAKILYGP 367


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDY----RIENG 335
           GK   V G GNV       + + G   + + +  G++Y+ DGI  + L        ++ G
Sbjct: 269 GKNVTVSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKLAFITNLKNVKRG 328

Query: 336 TVVGFP---GAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRIQAK---IIAEAANGPT 497
            +  +    G + +EG+   + KCD+ +P A +  ++KE+A  + A     +AE AN P+
Sbjct: 329 RISEYATKYGVEFHEGKRPWFLKCDVALPCATQNEVNKEDAEMLVANGCFCVAEGANMPS 388

Query: 498 TPAADKILIDRKILVIP 548
            P+A ++    KIL  P
Sbjct: 389 EPSAIEVFQKAKILYGP 405


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKAL----EDYRIENG 335
           GK   + G GNV  +     +  G   + + + +G++Y+  GID   L    E   ++ G
Sbjct: 558 GKVVTISGSGNVAQYALEKTLELGGKVVTLSDSNGTVYDPSGIDSAKLAFVMELKNVKRG 617

Query: 336 TVVGFP---GAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRI---QAKIIAEAANGPT 497
            +  +    G + + G+   + KCD+ +P A +  I++ +A  +       + E AN PT
Sbjct: 618 RIKEYADKYGVEYHAGKRPWFVKCDVALPCATQNEINQSDAETLVKNGCMCVGEGANMPT 677

Query: 498 TPAADKILIDRKILVIP 548
            P A K+    ++L  P
Sbjct: 678 EPEAIKVFQKARVLYAP 694


>SB_8406| Best HMM Match : UCR_UQCRX_QCR9 (HMM E-Value=3)
          Length = 342

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 23  HACVTGKPITKVVSMEEFLLLAEVCPRLGKLYQRGQLHEHDWYYSRLGREDVHRSRF 193
           H  VTG    +V    +    AE+   L K+Y        D++YSR  R +  R  F
Sbjct: 133 HVTVTGDEALRVEGQSDEETKAEIMRELRKVYGSDIPEPIDFFYSRWSRNNFTRGSF 189


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
 Frame = -3

Query: 414  RARVCHISRTACSHPRRASHRGILRQSHSRFYSPQEPWGQYHHGC----RWSRRAL*YRC 247
            +A  C  + +  + PRR S        H R  SP+  W   H       RW R A   RC
Sbjct: 776  KATWCQANTSVGNTPRRPSAPSSSSFLHERTESPRPTWKSRHTDTSSKERWRRWAESRRC 835

Query: 246  -KWLRPGPSTGRCAD 205
             + + P    GR AD
Sbjct: 836  ERRMPPALQPGRGAD 850


>SB_19270| Best HMM Match : Ribosomal_L38e (HMM E-Value=4.2)
          Length = 168

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 311 KSLGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDERLPAPT 159
           + + + T  V+     + DT    S PD     VQT +   +ND  LP PT
Sbjct: 80  RQIAIKTASVLAAPYFVPDTSYLLSIPDHYAKQVQTSLNLDINDLPLPVPT 130


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 358  APGNPTTVPFSIL*SSRALGSIPSWL*MEPSCSMIPMQVAPARTKYRQVCRPTLPKP*TM 179
            +P   +T P     S+  +   PS   ++PS S  P++ +P+ T       P  P P T 
Sbjct: 1288 SPSTTSTTPIKPSPSTTPIKPSPSTTPIKPSPSTTPIKPSPSTT-------PIKPSPSTT 1340

Query: 178  NVFP--PQPGVVPI 143
            +  P  P P   PI
Sbjct: 1341 STTPIKPSPSTTPI 1354


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = -3

Query: 399 HISRTACSHPRRASHRGILRQSHSRFYSPQEPWGQ--YHHGCRWSRRAL*YRCKWLRPGP 226
           H S T+ +  R        R  H   Y     W +  Y H  +W+R    +  KW RP P
Sbjct: 118 HFSNTSRATSRHEYITLWTRTHHGARYEHITVWTRPPYEHITKWTRPPYEHITKWTRP-P 176

Query: 225 STGRCADPRYRNL 187
                  PRY ++
Sbjct: 177 YEHITTRPRYEHI 189


>SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 396 CDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADK 515
           C+ +VP+++E V  K N +   A+    A +GP  P A +
Sbjct: 188 CNPMVPSSIENVNRKTNFNSQVAEPSEAAPHGPAPPLAGR 227


>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 473 DYLSLNPVCIFLVYNLFNGRGHEYVTFLVQHVLTLVGLRTGESYDSPI----LDSIVLKS 306
           D+  +   C+ ++  LF GR H +   L++     + L  G + D P+      + VLK 
Sbjct: 60  DHAEIRLSCLQIIRELF-GRSHRFRELLLEEFQVFLELVVGTNCDEPLPPPDCSAKVLKE 118

Query: 305 LGVNTI 288
             +N I
Sbjct: 119 TAINLI 124


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  DINAHACVTGKPITKVVSMEEFLLLAEVC 97
           D+N  AC+    + K  SME+FLLL  VC
Sbjct: 337 DMNTTACIMAV-LVKTRSMEQFLLLFIVC 364


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -3

Query: 405 VCHISRTACSHPRRASHRGILRQSHSRFYSPQEPWGQYHHGCRWSRRAL*YRCKWLRP 232
           VC  SR  C    R  H  I    H    S Q    +Y H  +W+R    +  KW RP
Sbjct: 557 VCTRSRHECI-TERTRHEYITC-GHDSNPSRQRTRSRYEHITKWTRPPYEHITKWTRP 612


>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
          Length = 1123

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 287 MVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDER 174
           ++VD  VV    +++GSG D + AGV   V++T N ER
Sbjct: 665 VLVDMGVVERRLESNGSGEDSLQAGV--GVSDTRNGER 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,502
Number of Sequences: 59808
Number of extensions: 443912
Number of successful extensions: 1195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)