Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P18
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 200 7e-52
U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z49132-11|CAA88991.1| 400|Caenorhabditis elegans Hypothetical p... 30 1.3
Z48585-11|CAA88487.1| 400|Caenorhabditis elegans Hypothetical p... 30 1.3
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 1.7
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 28 3.9
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 28 3.9
AF025456-3|AAB70956.1| 440|Caenorhabditis elegans Hypothetical ... 28 5.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 6.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 6.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 6.8
AF026204-4|AAB71250.1| 319|Caenorhabditis elegans Hypothetical ... 27 6.8
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.0
AC006674-13|AAF39942.1| 281|Caenorhabditis elegans Hypothetical... 27 9.0
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 200 bits (487), Expect = 7e-52
Identities = 98/152 (64%), Positives = 117/152 (76%), Gaps = 2/152 (1%)
Frame = +3
Query: 102 GLENFINEANYMSMIGTTPGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIY 281
GLE F N+A+YM M+G G GKT I+QGFGNVGLHT RYL RAG+ IGI E+D ++Y
Sbjct: 257 GLEVFTNDADYMKMVGLDTGLAGKTAIIQGFGNVGLHTHRYLHRAGSKVIGIQEYDCAVY 316
Query: 282 NHDGIDPKALEDYRIENGTVVGFPGAKPYEG-ENMLYEKCDILVPAAVEQVIHKENAHRI 458
N DGI PK LED++ NGT+ FPGAK ++ ++YEKCDI VPAA E+ IHKENA RI
Sbjct: 317 NPDGIHPKELEDWKDANGTIKNFPGAKNFDPFTELMYEKCDIFVPAACEKSIHKENASRI 376
Query: 459 QAKIIAEAANGPTTPAADKILIDR-KILVIPD 551
QAKIIAEAANGPTTPAAD+IL+ R L+IPD
Sbjct: 377 QAKIIAEAANGPTTPAADRILLARGDCLIIPD 408
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +1
Query: 37 GQTDYQGGIHGRVSATGRGVSTAWKTL 117
G+ GGIHGRVSATGRGV WK L
Sbjct: 235 GKPIVSGGIHGRVSATGRGV---WKGL 258
>U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical
protein K08B12.2a protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 491 PVGGLGDYLSLNPVCIFLVYNLFNGRGHEYVT 396
P+G L D+ L P I + NLFN +G++ VT
Sbjct: 247 PMGILSDFSLLTPETITAIKNLFNPQGNDIVT 278
>Z49132-11|CAA88991.1| 400|Caenorhabditis elegans Hypothetical
protein ZK673.9 protein.
Length = 400
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 162 WGGKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGID-PKALED-YRIENG 335
W + I Q FG+ + +Y +TC+G++ +D + +D P + D Y + G
Sbjct: 60 WQVRNTITQLFGSSRIGPTKYPADPRSTCVGVVTYDSDATTNAQLDGPHSFTDLYNVVQG 119
Query: 336 TV 341
++
Sbjct: 120 SL 121
>Z48585-11|CAA88487.1| 400|Caenorhabditis elegans Hypothetical
protein ZK673.9 protein.
Length = 400
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 162 WGGKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGID-PKALED-YRIENG 335
W + I Q FG+ + +Y +TC+G++ +D + +D P + D Y + G
Sbjct: 60 WQVRNTITQLFGSSRIGPTKYPADPRSTCVGVVTYDSDATTNAQLDGPHSFTDLYNVVQG 119
Query: 336 TV 341
++
Sbjct: 120 SL 121
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 3304 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 3346
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 4207 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 4249
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 5161 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 5203
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 6064 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 6106
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 6967 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 7009
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 230 DQVPAGVQTHVTET-LNDERLPAPTGSSTNHAHVIGLVDKVFQ 105
DQ+ A T T T N+E+ AP+ ++ V+GL +KVFQ
Sbjct: 7870 DQLAANTNTLKTATDSNNEKAVAPSSLISHDDLVVGLPEKVFQ 7912
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 324 IENGTVVGFPGAKPYEGENMLYEKCDILV--PAAVEQVIHKE-NAHRIQAK 467
I +GFPG E +++ YE C L +VEQ+I K N +I+ K
Sbjct: 216 IAKWVALGFPGMSDEEPDDIAYENCGFLKIRVFSVEQLIRKMINERKIKKK 266
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
protein F52G2.2a protein.
Length = 1319
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 249 IGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGF 350
+GI+ D SIY D K E R+ N +GF
Sbjct: 785 LGIVVADSSIYGSDNEQSKVFEFERLRNPITLGF 818
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
protein F52G2.2b protein.
Length = 1129
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 249 IGIIEHDGSIYNHDGIDPKALEDYRIENGTVVGF 350
+GI+ D SIY D K E R+ N +GF
Sbjct: 595 LGIVVADSSIYGSDNEQSKVFEFERLRNPITLGF 628
>Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical
protein F55C5.7 protein.
Length = 848
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 213 TCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRI 326
T +YLV+A + DGS++N +G+ A++D I
Sbjct: 306 TAKYLVKAEKLYRTYLSLDGSVFNFEGLLTAAMQDPNI 343
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = +3
Query: 276 IYNHDGIDPKALEDYRIENGTVVGFPGAKPYEGENMLYEKCDILVPAAVEQVIHKENAHR 455
I+ ++P LE+ +I++ T+ A E + ++ E + + AA E+ + EN H
Sbjct: 1476 IHTEMRLNPPNLEETKIDDTTINRSKQADKTEEKTIVEE--EPMEEAAAEKTVTAENDHV 1533
Query: 456 IQAKIIAEAANGPTTPAADKILID 527
K + P T A + ++D
Sbjct: 1534 DAEKTVIAVEIPPATEAEEDEVVD 1557
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = +3
Query: 276 IYNHDGIDPKALEDYRIENGTVVGFPGAKPYEGENMLYEKCDILVPAAVEQVIHKENAHR 455
I+ ++P LE+ +I++ T+ A E + ++ E + + AA E+ + EN H
Sbjct: 1476 IHTEMRLNPPNLEETKIDDTTINRSKQADKTEEKTIVEE--EPMEEAAAEKTVTAENDHV 1533
Query: 456 IQAKIIAEAANGPTTPAADKILID 527
K + P T A + ++D
Sbjct: 1534 DAEKTVIAVEIPPATEAEEDEVVD 1557
>AF025456-3|AAB70956.1| 440|Caenorhabditis elegans Hypothetical
protein C46F9.2 protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 66 WKSFCYWQRCVHGLENFINEANYMSMIGTTPGWGGKTFI 182
W C ++ + ++ + S+ G TP WG TFI
Sbjct: 205 WAIECEFEFRLISASGKLHSTEHKSIFGATPAWGRDTFI 243
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 344 YDSPILDSIVLKS----LGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDE 177
Y P LDS +L + + T++ DG + D + GPD P E L+ +
Sbjct: 2998 YPDPGLDSQILTTDVYGKPIYTVIGPDGTALPTDASGAAIGPDGTPISTD-ETGEPLDKD 3056
Query: 176 RLPAPTGSSTNHAHVIGLVDKVFQAVDTPL 87
PT N V+ V TP+
Sbjct: 3057 GSILPTDDYGNFVFVVSQELPTDAEVQTPI 3086
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 344 YDSPILDSIVLKS----LGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDE 177
Y P LDS +L + + T++ DG + D + GPD P E L+ +
Sbjct: 3043 YPDPGLDSQILTTDVYGKPIYTVIGPDGTALPTDASGAAIGPDGTPISTD-ETGEPLDKD 3101
Query: 176 RLPAPTGSSTNHAHVIGLVDKVFQAVDTPL 87
PT N V+ V TP+
Sbjct: 3102 GSILPTDDYGNFVFVVSQELPTDAEVQTPI 3131
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 344 YDSPILDSIVLKS----LGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDE 177
Y P LDS +L + + T++ DG + D + GPD P E L+ +
Sbjct: 3043 YPDPGLDSQILTTDVYGKPIYTVIGPDGTALPTDASGAAIGPDGTPISTD-ETGEPLDKD 3101
Query: 176 RLPAPTGSSTNHAHVIGLVDKVFQAVDTPL 87
PT N V+ V TP+
Sbjct: 3102 GSILPTDDYGNFVFVVSQELPTDAEVQTPI 3131
>AF026204-4|AAB71250.1| 319|Caenorhabditis elegans Hypothetical
protein C30E1.5 protein.
Length = 319
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +2
Query: 20 AHACVTGKPITKVVSMEEFLLLAEVCPR----LGKLYQRGQLHEH 142
AH V GKP++ VS+ E LL+ +V R +G +QR L+EH
Sbjct: 32 AHNLVQGKPVSVKVSVAEELLV-DVHYRDFKAIGIAFQRETLNEH 75
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 87 QRCVHGLENFINEANYMSMIGTTPGWGG 170
++ VHGL N + N+ SMI T WGG
Sbjct: 266 RKIVHGLANATEDYNHKSMIIDTE-WGG 292
>AC006674-13|AAF39942.1| 281|Caenorhabditis elegans Hypothetical
protein K12H6.7 protein.
Length = 281
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 524 DQDLVRCRRGRPVGGLGDYLSLNPVCIFLVYNLFNGRGHEYVTFL 390
++DL++ RGRP D L + P C+ V N F+ + ++TFL
Sbjct: 12 EEDLLK--RGRPFTVEVDELKI-PFCVSPVTNTFDNKKKVFLTFL 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,355,038
Number of Sequences: 27780
Number of extensions: 316012
Number of successful extensions: 1040
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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