Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P18
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.39 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   8.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 141 MIGTTPGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIG 254
           M+ + P W  + +    +G +G+     +V AGATC+G
Sbjct: 546 MVCSAPVWRFQPWGPFTWGGIGVVVLFAVVLAGATCLG 583


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 249 CKWLRPGPSTGRCADPRYRNLE 184
           CKWL  G +  R AD   R L+
Sbjct: 31  CKWLSEGGNDTRSADCTLRVLD 52


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +3

Query: 42  NRLPRWYPWKSFCYWQRCVHGLENFINEANY---MSMIGTTPGWGGKTFIV 185
           N L   Y WK   Y        +  I   +Y   M+ +  T  WG KTF++
Sbjct: 27  NSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTDQWGDKTFVI 77


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 154 VVPIMLM*LASLIKFSK 104
           V+PIML+ LA  + F K
Sbjct: 230 VIPIMLLFLAFFVSFRK 246


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 430 TCSTAAGTSMSHFSYSM 380
           T + +A T++SH  YSM
Sbjct: 186 TANYSASTTLSHAEYSM 202


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 172 RRSSFKVSVTWVCTPA 219
           RR++  +++ W+C+ A
Sbjct: 161 RRAAVLIAIVWICSSA 176


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 170 PAPTGSSTNHA 138
           P+PTGSS  H+
Sbjct: 62  PSPTGSSPQHS 72


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 188 LNDERLPAPTGSS 150
           +ND R PAPT ++
Sbjct: 94  INDHRQPAPTNNN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,023
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)