Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P18
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...   119   1e-27
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...   113   1e-25
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...   107   4e-24
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    29   1.6  
At1g02670.1 68414.m00217 DNA repair protein, putative similar to...    29   1.6  
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ...    29   2.1  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    29   2.7  
At5g56790.1 68418.m07087 protein kinase family protein contains ...    28   3.6  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    28   3.6  
At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-...    28   4.8  
At5g51920.1 68418.m06441 expressed protein ; expression supporte...    27   8.3  
At3g42950.1 68416.m04511 glycoside hydrolase family 28 protein /...    27   8.3  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score =  119 bits (286), Expect = 1e-27
 Identities = 58/128 (45%), Positives = 83/128 (64%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVG 347
           G+ F++QGFGNVG    + +   G   + + +  G+I N DGID  AL  +  E+  V G
Sbjct: 206 GQRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNKDGIDIPALLKHTKEHRGVKG 265

Query: 348 FPGAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILID 527
           F GA P +  ++L E CDILVPAA+  VI++ENA+ I+AK I EAAN PT P AD+IL  
Sbjct: 266 FDGADPIDPNSILVEDCDILVPAALGGVINRENANEIKAKFIIEAANHPTDPDADEILSK 325

Query: 528 RKILVIPD 551
           + ++++PD
Sbjct: 326 KGVVILPD 333


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score =  113 bits (271), Expect = 1e-25
 Identities = 54/128 (42%), Positives = 83/128 (64%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVG 347
           G+ F +QGFGNVG    + +   G   + + +  G+I N++GID  +L ++  EN  + G
Sbjct: 206 GQRFAIQGFGNVGSWAAKLISDKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKG 265

Query: 348 FPGAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILID 527
           F GA   + +++L E CDILVPAA+  VI++ENA+ I+AK I E AN PT P AD+IL  
Sbjct: 266 FDGADSIDPDSILVEDCDILVPAALGGVINRENANEIKAKFIIEGANHPTDPEADEILKK 325

Query: 528 RKILVIPD 551
           + ++++PD
Sbjct: 326 KGVMILPD 333


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score =  107 bits (258), Expect = 4e-24
 Identities = 49/128 (38%), Positives = 78/128 (60%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDYRIENGTVVG 347
           G TF++QGFGNVG    + +   G   + + +  G+I N +GID  AL  ++   G++  
Sbjct: 206 GLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLND 265

Query: 348 FPGAKPYEGENMLYEKCDILVPAAVEQVIHKENAHRIQAKIIAEAANGPTTPAADKILID 527
           F G      + +L  +CD+L+P A+  V++KENA  ++AK I EAAN PT P AD+IL  
Sbjct: 266 FNGGDAMNSDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSK 325

Query: 528 RKILVIPD 551
           + ++++PD
Sbjct: 326 KGVIILPD 333


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -1

Query: 239 SGPDQVPAGVQTHVTETLNDERLPAPTGSSTNHAHVIGLVDKVFQAVD---TPLPVAETL 69
           S PD+  +G  +H  +T +D R P P         + G +       D   TP+P  + +
Sbjct: 461 SMPDKCISGALSHAVDTSDDNRTPVPEEKGIPDQCISGALSHAVDTSDDNKTPVPEEKGI 520

Query: 68  P 66
           P
Sbjct: 521 P 521


>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
           SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 678

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -1

Query: 200 VTETLNDERLPAPTGSSTNHAHVIGLVDKVFQAVDTPLPVAETLP 66
           V++T  D  + A T    N+AH+ GL+ ++ QAVD P  V+ + P
Sbjct: 402 VSKTTFDGYIQAGT-LMNNYAHIFGLLIRLRQAVDHPYLVSYSSP 445


>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 470

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 42  NRLPRWYPWKSFCYWQRCVHGLENFIN 122
           N +P+  PWK   YW+R ++ +  F N
Sbjct: 31  NIVPQLVPWKRVTYWRRLMNSVSAFRN 57


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -1

Query: 245 SGSGPDQVPAGVQTHVTETLNDERLPAPTGSSTNHAHV---IGLVDKVFQAVDTPLPVAE 75
           S SGP   P+ + +   +     R+P P GS  +H  V    G +  +   +  P P+AE
Sbjct: 587 SMSGPHGHPSMMMSRPPQMQPVMRVPPPPGSQFSHMQVPQPYGQLPPLSMGMMQPPPMAE 646

Query: 74  TLPWIPPW*SVCPL 33
             P  PP  +  PL
Sbjct: 647 MPPPPPPGEAPPPL 660


>At5g56790.1 68418.m07087 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 669

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 338 SPILDSIVLKSLGVNTIMVVDGAVVLYDTDASGSGPDQVPAGVQTHVTETLNDERLPAPT 159
           SP L S V + L    + V DG+   +++D+   G    P  + +  +  +    L +P+
Sbjct: 239 SPFLASRVFEGLKKENLWVNDGSKSFFESDSDSDGEKWSPLSMASSSSHPVTTADLLSPS 298

Query: 158 G 156
           G
Sbjct: 299 G 299


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 201 VGL-HTCRYLVRAGATCIGIIEHDGSIYNHDGIDPKALEDY 320
           +GL    R LV AGA  +G    DG     DGI  K LE +
Sbjct: 625 IGLKQALRILVAAGAAEVGTYRSDGQRMKCDGIKQKDLEAF 665


>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
           3-PGDH identical to SP|O04130
          Length = 624

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 168 GKTFIVQGFGNVGLHTCRYLVRAGATCIGIIEHD 269
           GKT  V GFG VG    R   RA    + +I HD
Sbjct: 221 GKTLAVMGFGKVGTEVAR---RAKGLGMTVISHD 251


>At5g51920.1 68418.m06441 expressed protein ; expression supported
           by MPSS
          Length = 570

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 440 LVYNLFNGRGHEYVTFLVQHVLTLVGLRTGESYDSPIL 327
           + +NLFN +G +   F+VQ +     +  G+S+   IL
Sbjct: 455 VAFNLFNHKGEKIEPFIVQKLAECSNISLGKSFLKNIL 492


>At3g42950.1 68416.m04511 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase precursor [Cucumis melo]
           GI:3320460; contains PF00295: Glycosyl hydrolases family
           28
          Length = 484

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 282 NHDGIDPKALEDYRIENGTV-VGFPG 356
           N DGIDP + ED  IEN  + VG  G
Sbjct: 252 NTDGIDPDSCEDMLIENSYISVGDDG 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,740
Number of Sequences: 28952
Number of extensions: 296737
Number of successful extensions: 861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)