Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P17
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   120   7e-29
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    49   3e-07
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    42   4e-05
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   3.7  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   3.7  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   3.7  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.9  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   6.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   8.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  120 bits (289), Expect = 7e-29
 Identities = 61/120 (50%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
           ++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                   
Sbjct: 61  RRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGK 120

Query: 191 D-EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
             +   K+P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IV
Sbjct: 121 SAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIV 180


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           LR G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +2

Query: 206 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 358
           K+ + LR G   V K V K +  LV++A D+ P++++  +P LC    VPY
Sbjct: 50  KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 115
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 27  SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 125
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 339 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 241
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 86  TAKGLFKILEKYR 124
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 366 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 226
           T+     I+  +AG  + T+S+GS+S A T + A   ST  V  +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 155
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 12  KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 134
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 54  STSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 152
           ST SP+H +  QP+  + S  N   + R +  S
Sbjct: 826 STKSPQHKLSDQPRSRNNSISNVSHRERSNSVS 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,931
Number of Sequences: 5004
Number of extensions: 21993
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)