Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P17
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 128 1e-30
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 115 1e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 101 2e-22
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 45 2e-05
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 44 5e-05
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 40 8e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 40 8e-04
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 32 0.12
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 32 0.12
01_01_0437 - 3293624-3294029,3294094-3294212 29 1.1
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 2.6
04_04_0620 + 26656072-26656417,26656585-26657396 27 3.5
02_04_0134 - 20109610-20109984 27 3.5
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 4.6
04_04_0619 + 26652923-26653267,26653440-26654273 27 4.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 128 bits (309), Expect = 1e-30
Identities = 65/119 (54%), Positives = 79/119 (66%)
Frame = +2
Query: 11 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
Q+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 59 QRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGK 118
Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIV
Sbjct: 119 TVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 176
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 115 bits (277), Expect = 1e-26
Identities = 59/114 (51%), Positives = 74/114 (64%)
Frame = +2
Query: 11 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
Q+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 43 QRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGK 102
Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 352
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +
Sbjct: 103 TVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 101 bits (242), Expect = 2e-22
Identities = 56/119 (47%), Positives = 75/119 (63%)
Frame = +2
Query: 11 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
Q+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 60 QRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEA------------ 107
Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
K+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIV
Sbjct: 108 -----KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 81
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 43.6 bits (98), Expect = 5e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 39.5 bits (88), Expect = 8e-04
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G V K + + + L +IA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 39.5 bits (88), Expect = 8e-04
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G V K + + L VIA ++ PI+++ +P LC + +PY V
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 352
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 352
G K +EK AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 197 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 301
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 27 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 152
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 194 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 304
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 151 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 303
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 361
G TV L++ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 194 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 304
E P RP + A + +VE +KAQ++ + H +DP
Sbjct: 352 ESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLGHVMDP 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,171
Number of Sequences: 37544
Number of extensions: 166640
Number of successful extensions: 448
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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