Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P17
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   8e-35
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       107   2e-24
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        49   1e-06
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          44   3e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               32   0.17 
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  142 bits (344), Expect = 8e-35
 Identities = 68/119 (57%), Positives = 82/119 (68%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
           QK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET                   
Sbjct: 66  QKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGK 125

Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           +E P K+P  ++ G N +T LVE KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIV
Sbjct: 126 EEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIV 184


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  107 bits (258), Expect = 2e-24
 Identities = 51/90 (56%), Positives = 60/90 (66%)
 Frame = +2

Query: 98  LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKAQL 277
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 278 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           VVIAHDVDPIE+V++LPALCRKM VPYCIV
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIV 93


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           LR G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFV 142


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 209 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           +  TLR G   V K + K +   V++A DV PI+++  +P +C    +PY  V
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYV 147


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVP 355
           L  G +   K ++K++A L +++++ D    V  + ALC + G+P
Sbjct: 38  LSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIP 82


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 10  SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 126
           S GC T SS S  A  PV PD    + Q  +  L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,167,548
Number of Sequences: 59808
Number of extensions: 181949
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)