Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P17
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   136   6e-33
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   120   3e-28
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    58   2e-09
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    48   3e-06
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    38   0.003
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    37   0.004

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  136 bits (328), Expect = 6e-33
 Identities = 63/119 (52%), Positives = 80/119 (67%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
           Q A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                   
Sbjct: 67  QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGK 126

Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
            E   KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+
Sbjct: 127 KEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 185


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  120 bits (289), Expect = 3e-28
 Identities = 62/119 (52%), Positives = 79/119 (66%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
           Q A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+                   
Sbjct: 67  QSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVT--------------- 111

Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
                KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+
Sbjct: 112 -----KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAII 165


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 133
           Q A+LQ+RLKVPP INQF   LD  +A+  FK+L+KYRPE+
Sbjct: 170 QSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +2

Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           L+ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFV 83


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 11  QKAVLQRRLKVPPPINQFTQTLD 79
           Q A+LQ+RLKVPP INQF   LD
Sbjct: 170 QSAILQKRLKVPPTINQFRTALD 192


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 218 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
           TLR G   V K + + +  + ++A +V PI++   +P +C +  +PY  +
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,208
Number of Sequences: 27780
Number of extensions: 130124
Number of successful extensions: 281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)