Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P17
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 131 2e-31
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 131 2e-31
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 3e-05
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 4e-05
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 4e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 6e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.003
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 34 0.026
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 34 0.026
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 33 0.078
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 33 0.078
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 33 0.078
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin... 26 6.8
At3g42780.1 68416.m04469 hypothetical protein hypothetical prote... 26 6.8
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 131 bits (316), Expect = 2e-31
Identities = 67/119 (56%), Positives = 79/119 (66%)
Frame = +2
Query: 11 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
QK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 57 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGK 116
Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIV
Sbjct: 117 PAES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 174
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 131 bits (316), Expect = 2e-31
Identities = 66/119 (55%), Positives = 79/119 (66%)
Frame = +2
Query: 11 QKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXX 190
QK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 58 QKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGK 117
Query: 191 DEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIV
Sbjct: 118 PSES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 175
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G V K + + + L VIA ++ PI+++ LP LC + GVPY V
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYV 99
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.6 bits (98), Expect = 4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.6 bits (98), Expect = 4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.2 bits (97), Expect = 6e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 221 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
L+ G N TK + + ++ +V+A D +P+E++L LP L VPY V
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 239 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 367
+ TK + + ++ VV+A D +P+E++L LP L VPY V
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFV 115
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 337
G + KL+EK+ AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 337
G + KL+EK+ AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 337
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 337
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 230 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 337
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
phosphoesterase family protein contains Pfam profiles:
PF00149 calcineurin-like phosphoesterase, PF01344 kelch
motif
Length = 881
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 197 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHD 295
P + P + G + VT+ ++ K QL++ AH+
Sbjct: 751 PNARGPGLVTFGPDRVTEFCKRNKLQLIIRAHE 783
>At3g42780.1 68416.m04469 hypothetical protein hypothetical protein
MZB10.16 - Arabidopsis thaliana, EMBL:AC009326
Length = 176
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 212 PNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFL 325
P L KLV +++VI DVD ++L+L L
Sbjct: 116 PGNLTTEEMDTAKLVVGDDGKIIVIKFDVDSVKLLLLL 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,686,213
Number of Sequences: 28952
Number of extensions: 124233
Number of successful extensions: 336
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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